Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq260 80.6 7e-13 >seq260 Length=11408 Score = 80.6 bits (88), Expect = 7e-13 Identities = 236/347 (68%), Gaps = 20/347 (6%) Strand=Plus/Minus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| ||||||| |||| ||||| | |||||| ||| ||||| |||||| | | Sbjct 11351 GTTCGATCCTCCAAATAGTT-TTACCTATT-TTTCAATCTGTTCATAGT-TAGATCACTC 11295 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 ||||| ||||||| || | || | || | ||| ||| | || |||||| Sbjct 11294 GGTTT-CGGGTCTTATTTTTATAACTTAAAAGCATTT-TAAAACTTGAATTAT-CTACGC 11238 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | || |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 11237 CTACTTTAAAAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 11180 Query 225 GTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCT 284 |||| | ||||| | ||| | ||| | || || | ||| ||||||| || | Sbjct 11179 GTACACTGTCACTTTATAAAAAGT--TCCAATTGATTATTAACATTAAGTTTCAGAAT-T 11123 Query 285 ATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACTATC 343 |||||| | || |||||||| | ||||||| | || ||||| |||||||||| Sbjct 11122 ATTTCAAAC-----TCGAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACTATC 11068 Query 344 GGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390 ||||| | | | | | || || |||| |||| |||| ||||||| Sbjct 11067 GGTCATTAATT--TTTACAGGTTTTGAGGGTGGTTCCCCAATATTCA 11023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241587050112