Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq985 163 4e-38 seq718 154 2e-35 >seq985 Length=4014 Score = 163 bits (180), Expect = 4e-38 Identities = 195/260 (75%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| ||| || Sbjct 328 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGC-CTTC-CA- 272 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 271 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 213 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 || |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 212 GCATTTTTCAAATTATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 153 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 152 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 93 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 92 GATGTGATGAGTCGACATCG 73 >seq718 Length=9704 Score = 154 bits (170), Expect = 2e-35 Identities = 194/263 (74%), Gaps = 10/263 (4%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || | Sbjct 9376 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGC--TTAAAA- 9432 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 9433 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 9491 Query 137 TCAAATTTCC----TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAA 192 ||| |||| || | | |||||| ||| ||||||||| ||||||||| || Sbjct 9492 TCATTTTTCAAAAATATTTATAGAA--GATAGGAACCAAACTGTCTCACGACGTTCTAAA 9549 Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252 |||| ||| ||| || ||||||| ||||||||||| ||||||||| |||| || |||| | Sbjct 9550 CCCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTCCAGCTC 9609 Query 253 CAGGATGAGACGAGCCGACATCG 275 ||||||| || ||| |||||||| Sbjct 9610 CAGGATGTGATGAGTCGACATCG 9632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780792110748