Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq260 104 6e-20 seq985 84.2 5e-14 >seq260 Length=11408 Score = 104 bits (114), Expect = 6e-20 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 57 CGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 116 ||| |||||| ||| ||||||||||||||||| | ||| ||| |||||||||||| Sbjct 3 CGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTTTGGGCCGTGTCTCAGT 61 Query 117 TCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA 176 ||| |||||||| |||| || ||| |||||||| ||| |||| || ||| | | ||| Sbjct 62 CCCAATGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAGTCGGCTTGGTAGTCTTTTA 121 Query 177 CCCCGCCAACTAGCTAATC 195 | ||||||| |||||| Sbjct 122 AACTACCAACTACCTAATC 140 >seq985 Length=4014 Score = 84.2 bits (92), Expect = 5e-14 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| Sbjct 4007 ATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTTTGGGCCGTGTCTCAGTCCCAA 3949 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||| || ||| |||||||| ||| | | || ||| | | |||| Sbjct 3948 TGTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTATTAAATTA 3889 Query 182 CCAACTAGC-TAATC 195 ||||||| | ||||| Sbjct 3888 CCAACTACCGTAATC 3874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222387250368