Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq260 104 7e-20 seq985 87.8 5e-15 >seq260 Length=11408 Score = 104 bits (114), Expect = 7e-20 Identities = 112/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||| ||||||||| ||| | ||||||| |||| ||| |||| | Sbjct 146 GCGTAAGATTAGGTAGTTGGTAGTTTAAAAGACTACCAAGCCGACTATCTTTAGCTGGTT 87 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||| || ||||| |||||||||| |||||||||||| ||||||| | ||||||| Sbjct 86 TGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACT-TTTTTAAAGGCAGC 28 Query 281 AGTGGGGAATATTGCACAATGGGCAAA 307 |||||||||| ||| |||||| || || Sbjct 27 AGTGGGGAATTTTGGACAATGAGCGAA 1 >seq985 Length=4014 Score = 87.8 bits (96), Expect = 5e-15 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | |||||||||| ||| | ||||||| | | ||| |||| | ||| | Sbjct 3874 GATTACGGTAGTTGGTAATTTAATAGACTACCAAGCCTATTATCTTTAGCTGGTTTGAAA 3933 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | |||||||||||| Sbjct 3934 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACT-TTTTTAAAGGCAGCAGTGG 3992 Query 286 GGAATATTGCACAAT 300 ||||| ||| ||||| Sbjct 3993 GGAATTTTGGACAAT 4007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497584380032