Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq549 244 8e-60 >seq549 Length=149600 Score = 244 bits (270), Expect = 8e-60 Identities = 599/887 (68%), Gaps = 27/887 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||| ||| || | |||| || ||| |||||||| ||||||||| Sbjct 87615 CGATTCGTGCTCTTCCCGATCCAGGAGAAGGAGATCTGGGATATGTACAAGAAGGCGGAA 87674 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGACATGAATGACTGGGAGCG 61172 || |||||||||||| |||||| ||||| |||| || ||| | || |||||| ||| Sbjct 87675 GCCAGCTTCTGGACGGTCGAGGAGATCGATCTTGTGCAC-GACCTCAAGGACTGG-AGCA 87732 Query 61173 --TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 || | ||| | ||| | || ||||| || || ||| | |||||||| || || Sbjct 87733 ACTTGACCGA-CAATGAGCGTCACTTCATCAAGCACGTGCTCGCGTTCTTCGCTGCCAGT 87791 Query 61231 GACGGTATCGTCAATGAGAA--TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 || ||||| || || ||||| || |||| ||| | || || || ||| | | Sbjct 87792 GATGGTATTGTGAACGAGAACCTTGCCATGAAC--TTCAGCAACGAAGTCCAGGTGCCTG 87849 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 | || || || ||||||||||||||||||||||| ||||| |||||||||| |||||| Sbjct 87850 AAGCCCGCTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCGGAAATGTACT 87909 Query 61349 GTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGA-TTGTTCAATG 61405 | | || || |||||||||| ||| || | || ||| |||| | |||||| | Sbjct 87910 CGCTGTTGATTGACACGTACATCAAGGATGCCGCCGAGAA---GAACCACTTGTTCCGCG 87966 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGA-TCAC- 61463 |||| ||||| || || ||| || ||| || | ||||| || ||| | || Sbjct 87967 CCATTGAGACAATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACT 88026 Query 61464 CAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT 61523 ||| | |||| | | |||| ||| || | | || || || | | |||||| | || Sbjct 88027 CAG-AGAACGCCG-CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTT 88084 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 ||| || ||||| | | |||| ||| | ||||| ||||| || ||||| || || Sbjct 88085 CTTCTCGGGTTCGTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCT 88144 Query 61584 GACCTTCAGCAATGAGTTGATATCA--CGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641 | |||| || ||| | ||||| || || || || | || ||||| || || Sbjct 88145 CAGCTTCTCGAACGAGCT--TATCAGTCGTGATGAAGGTCTCCACTGTGACTTCGCCTGC 88202 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 ||||| | ||| | | || || || |||| | ||| ||| | |||||||| Sbjct 88203 TTGCTCTACAA---CAAGCTTGTTAACCGTCTCCCAGAGTCGCGAATCCACGAGATTGTC 88259 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 |||| || || || ||||| |||| || | | ||| | | || ||| || ||| Sbjct 88260 AGTGATGCCGTCACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATC 88319 Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821 || ||||| | | || |||| ||||| || || || || || || ||||| | | Sbjct 88320 GGTATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCAC 88379 Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 | | | ||| | | |||||| || || ||||||||||| | ||||| ||||| Sbjct 88380 GCTCTTGGTGTCTCGAAGATCTACAACGCGTCCAACCCATTTGACTGGATGGATATGATC 88439 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| | |||||||| || || |||||||| ||||| || || || Sbjct 88440 TCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATA 88486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562946289520