Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq4587 98.7 1e-18 seq12173 93.3 5e-17 seq4604 93.3 5e-17 >seq4587 Length=8477 Score = 98.7 bits (108), Expect = 1e-18 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| ||||| || || || || Sbjct 4337 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCATAGCATTCCCAC 4278 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||| | ||||| | | | || || | || |||| ||| || || || || Sbjct 4277 CTCGTTCATTCAACTTAGTTAATACTTGGGGACCTTAGCTGATGGTCTGGGTTGTTTCCC 4218 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACT-CGCGCGGCATGACTGATGCGCATT 179 |||||| ||||||| |||||| ||||||| | || |||| | ||| ||||| Sbjct 4217 TCTCGGCGCTGGACCTTCGCACCCAACGCCTCACTGCTTGCTACATG--TCATG-GCATT 4161 Query 180 CGGAGTT 186 ||||||| Sbjct 4160 CGGAGTT 4154 >seq12173 Length=569 Score = 93.3 bits (102), Expect = 5e-17 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| ||||||||||| |||||| | ||| || Sbjct 383 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTGGCTGTCTAAGCAACTGAAC 324 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 || |||| | ||||| | |||| || | || ||| ||| || ||||| || Sbjct 323 CTCCTTAGTTCAACTTAGAGTAGATTTAGGGACCTTAGCTGTAGGTCTGGGTTCTTTCCC 264 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180 |||||| |||||||| ||||| |||||||| | || || | | | |||||| Sbjct 263 TCTCGGATTGGGACCTTAGCACCCCAACCCTCACT-GTATGGTAT-ATTTACTAGCATTC 206 Query 181 GGAGTTTGGCAGGACTTG 198 |||||| | | ||| ||| Sbjct 205 GGAGTTCGTCTGGATTTG 188 >seq4604 Length=8381 Score = 93.3 bits (102), Expect = 5e-17 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| ||||||||||| |||||| | ||| || Sbjct 5547 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTGGCTGTCTAAGCAACTGAAC 5488 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 || |||| | ||||| | |||| || | || ||| ||| || ||||| || Sbjct 5487 CTCCTTAGTTCAACTTAGAGTAGATTTAGGGACCTTAGCTGTAGGTCTGGGTTCTTTCCC 5428 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180 |||||| |||||||| ||||| |||||||| | || || | | | |||||| Sbjct 5427 TCTCGGATTGGGACCTTAGCACCCCAACCCTCACT-GTATGGTAT-ATTTACTAGCATTC 5370 Query 181 GGAGTTTGGCAGGACTTG 198 |||||| | | ||| ||| Sbjct 5369 GGAGTTCGTCTGGATTTG 5352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537530592984