Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq4587 100 5e-19 seq3245 89.7 1e-15 seq4107 87.8 3e-15 seq4750 86.0 1e-14 seq6130 82.4 1e-13 seq4604 77.0 6e-12 seq7909 75.2 2e-11 seq3561 73.4 8e-11 >seq4587 Length=8477 Score = 100 bits (110), Expect = 5e-19 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 209 GGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTT 268 |||||| ||||| || ||||||||| ||||| |||||| |||||| ||||||||| Sbjct 4640 GGAATATTAACCCGTT-TGCCATCGGCTTCGCCTGTCGGCTACACCTTAGGACCCGACTA 4582 Query 269 ACCCTGATCCGATTAGCGGTGATC-AGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCA 327 |||||| || ||||| | || | |||||||||||||||| |||||| | ||| || || Sbjct 4581 ACCCTGTTCTGATTAACATCGAACTAGGAAACCTTAGTCTTACGGCGATGAGGTATCTCA 4522 Query 328 CC 329 || Sbjct 4521 CC 4520 >seq3245 Length=19255 Score = 89.7 bits (98), Expect = 1e-15 Identities = 96/125 (77%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 209 GGAATACTAACC-GTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACT 267 |||||| ||||| ||||| |||||| | | || ||||| |||||| | |||||| Sbjct 5339 GGAATATTAACCCGTTTC--CCATCGATTACACCTTTCGGTCTCACCTTAGGGGCCGACT 5396 Query 268 TACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCA 327 |||||| |||||||||| || ||||||||||| ||||| ||||| ||| |||| || Sbjct 5397 CACCCTGCGCCGATTAGCGTTGCGCAGGAAACCTTGGTCTTCCGGCGTGGGAGTTTTTCA 5456 Query 328 CCCCC 332 | ||| Sbjct 5457 CTCCC 5461 >seq4107 Length=10989 Score = 87.8 bits (96), Expect = 3e-15 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 209 GGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATG-ACCCGACT 267 |||||| ||||| || | |||||| ||| ||| || ||||| | | |||||| Sbjct 7138 GGAATATTAACCAGTTTT-CCATCGACTACGCTTTTCAGCCTCGCCTTAGGGAACCGACT 7196 Query 268 TACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCA 327 |||||| ||||||||||| ||| ||||||||||| | |||||||||||||| || || Sbjct 7197 CACCCTGCTCCGATTAGCGTTGAGCAGGAAACCTTGGATTTTCGGCGAGGGGGCCTCTCA 7256 Query 328 CCCCC 332 ||||| Sbjct 7257 CCCCC 7261 >seq4750 Length=7679 Score = 86.0 bits (94), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 253 CCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGG 312 ||||| ||||||||| |||||||||||||||||| ||||||||||||||| | ||||||| Sbjct 6876 CCTTAGGACCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTT-GCCTTTCGG 6818 Query 313 CGAGGGGGTTT 323 ||| ||||| Sbjct 6817 -GAGCAGGTTT 6808 >seq6130 Length=3286 Score = 82.4 bits (90), Expect = 1e-13 Identities = 116/161 (72%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 173 CTCCTGCGTCCCCACGTCACCCTCAAATGTAGTAACGGAATACTAACC-GTTTCTGCCAT 231 || || ||||||| | || | || | | |||| |||||| || || ||||| |||| Sbjct 2516 CTGCTCCGTCCCCCCATCGCACTATGAAGAAGTACGGGAATATTAGCCCGTTTC--CCAT 2459 Query 232 CGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGAT 291 || || | |||| | ||||| | |||||| |||||| |||||||||| || Sbjct 2458 CGACTACGGCTTTCGCCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAGCGTTGCG 2399 Query 292 CAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCACCCCC 332 ||||||||||| |||| ||||| || ||||| ||||||| Sbjct 2398 CAGGAAACCTTGATCTTCCGGCGGGGAGGTTTTTCACCCCC 2358 >seq4604 Length=8381 Score = 77.0 bits (84), Expect = 6e-12 Identities = 139/202 (69%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 129 CTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACG 188 |||| | ||| ||| |||||||||||| |||| | ||||| || |||| || | Sbjct 3867 CTACTCGCTTCAACGTACTATTCCGTCAGTACGCGGTACTTTCACTACTCCGTCACCCCA 3808 Query 189 TCACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGC 248 || | | || |||| | ||||| |||| | || | |||||| | || ||||| Sbjct 3807 TCGCAATTAATGCCAGTATCAGAATATTAACTGATTGT-CCATCGACTACCCCTTTCGGG 3749 Query 249 TGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTT 308 | ||||| | || |||| |||| | ||||||| || |||||||||||||| Sbjct 3748 TTCGCCTTAGGTCCTGACTAACCCCCGGCTGATTAGCATTGCCGGGGAAACCTTAGTCTA 3689 Query 309 TCGGCGAGGGGGTTTCCCACCC 330 |||| | | ||||||| ||||| Sbjct 3688 TCGGTGTGCGGGTTTCTCACCC 3667 Score = 77.0 bits (84), Expect = 6e-12 Identities = 139/202 (69%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 129 CTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACG 188 |||| | ||| ||| |||||||||||| |||| | ||||| || |||| || | Sbjct 5925 CTACTCGCTTCAACGTACTATTCCGTCAGTACGCGGTACTTTCACTACTCCGTCACCCCA 5866 Query 189 TCACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGC 248 || | | || |||| | ||||| |||| | || | |||||| | || ||||| Sbjct 5865 TCGCAATTAATGCCAGTATCAGAATATTAACTGATTGT-CCATCGACTACCCCTTTCGGG 5807 Query 249 TGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTT 308 | ||||| | || |||| |||| | ||||||| || |||||||||||||| Sbjct 5806 TTCGCCTTAGGTCCTGACTAACCCCCGGCTGATTAGCATTGCCGGGGAAACCTTAGTCTA 5747 Query 309 TCGGCGAGGGGGTTTCCCACCC 330 |||| | | ||||||| ||||| Sbjct 5746 TCGGTGTGCGGGTTTCTCACCC 5725 >seq7909 Length=1341 Score = 75.2 bits (82), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 209 GGAATACTAACC-GTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACT 267 |||||| ||||| ||||| |||||| || | |||| | ||||| | ||||| Sbjct 505 GGAATATTAACCCGTTTC--CCATCGACTACGGCTTTCGCCCTCGCCTTAGGGGTCGACT 562 Query 268 TACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCA 327 |||||| ||||||| || || ||||||||||| |||||||||| || ||||| || Sbjct 563 AACCCTGCCCCGATTAACGTTGGGCAGGAAACCTTGATCTTTCGGCGGGGAGGTTTTTCA 622 Query 328 CCCCC 332 ||||| Sbjct 623 CCCCC 627 >seq3561 Length=15242 Score = 73.4 bits (80), Expect = 8e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 253 CCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGG 312 ||||| | |||||| |||||| |||||||||| || ||||||||||| |||| ||| Sbjct 285 CCTTAGGGGCCGACTCACCCTGTCCCGATTAGCGTTGGACAGGAAACCTTGATCTTCCGG 344 Query 313 CGAGGGGGTTTCCCACCCCC 332 || || ||||| ||||||| Sbjct 345 CGGGGAGGTTTTTCACCCCC 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959872060800