Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2843 401 9e-110 seq4075 264 2e-68 seq4457 262 6e-68 seq4286 206 4e-51 seq3262 168 1e-39 seq4254 122 1e-25 seq975 89.7 8e-16 seq133 84.2 3e-14 seq1668 75.2 2e-11 >seq2843 Length=29081 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 16601 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 16658 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16659 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 16718 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 16719 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 16778 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 16779 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 16838 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 16839 GCCATAGTCCCTCTAA 16854 Score = 226 bits (250), Expect = 4e-57 Identities = 190/229 (83%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||| | Sbjct 4130 GTACAAAGGGCAGGGACGTAATCAATGCGAGCT-GATGACTCGCGTTTACTAGGAATT-C 4187 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||| || || |||| ||| ||| ||||| ||||||| | |||| ||||| Sbjct 4188 CTCGTTGACGATTAATAATTCCAAAAATCGATCCCTATCACGACTAGTGTTCAGAGATTG 4247 Query 121 CCCGGACCTGTCGGCCAAGGTG-ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| || || ||||| | | |||||||| | ||||||||||||||||||| Sbjct 4248 CCCATGCCTATCAGCAAAGGTACAAACACTCGTTGGACTAGTCAGTGTAGCGCGCGTGCG 4307 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||| ||||||||||||||||||||||||||||| | ||||||| Sbjct 4308 GCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCCCCAACTTCC 4356 Score = 168 bits (186), Expect = 1e-39 Identities = 198/268 (74%), Gaps = 31/268 (12%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||| | |||| || | || ||||| | ||| |||||||||||| | Sbjct 27246 GTACAAAGGGCAGGGACGAAATCAATGCAAACT-GATGATTTGCGTTTACTAGGAATT-C 27303 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||||| || ||||||||| |||||||| | ||||| | || ||||||| Sbjct 27304 CTCGTTCAAGACAAATAATTGCAATCGTCTATCCCAAGCACGACAAGTCTTTCAAGATTA 27363 Query 121 CCCGGACCTGTCG--GC----------------CAAGG----TGATAGA-------CTCG 151 ||| | | || || ||||| ||||| | || | Sbjct 27364 CCCACATGTTTCCATGCAGGATCAACACCCACGCAAGGCGAGTGATAAAAGACATACTTG 27423 Query 152 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211 ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 27424 TTGAACTTGTCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGACCTGT 27483 Query 212 TATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||| |||||| ||| |||||| Sbjct 27484 TATTGCCTCTCACTTCCATGGACTAAAA 27511 >seq4075 Length=11175 Score = 264 bits (292), Expect = 2e-68 Identities = 197/228 (86%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||| | ||| |||||| |||||||||||| ||||||||||||| | Sbjct 3094 GTACAAAGGGCAGGGACGAAATCAGCGCGAG-TTGATGACTCGCACTTACTAGGAATT-C 3037 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | || |||| |||| | | |||||||||||||| || |||||||||||| Sbjct 3036 CTCGTTTACGTTGAAAAATTACAATCAACGATCCCCATCACGATAAACTTTCAAAGATTA 2977 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| ||| | ||| | |||||||| || |||||||||||||||||||||| Sbjct 2976 CCCGGACCTAACGGTCTAGGGTCAAAACTCGTTGCATTCATCAGTGTAGCGCGCGTGCGG 2917 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 2916 CCCAGGACATCGAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 2869 >seq4457 Length=11085 Score = 262 bits (290), Expect = 6e-68 Identities = 201/233 (86%), Gaps = 9/233 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||||| ||||||||||| ||||||| | ||| Sbjct 8428 GTACAAAGGGCAGGGACGTAATCAATGCGAGCT-GATGACTCGCGTTTACTAGAA--TTC 8484 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| |||| ||| ||||||||||||||||||| ||||||||| | ||||| ||||| Sbjct 8485 CTCGTTCAAGATCAATAATTGCAATGATCTATCCCTATCACGATGCACGTTCAACAGATT 8544 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGA----CTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||| ||| ||| || ||| | | | ||||||| || ||||||||||||||||| Sbjct 8545 ACCCGGGCCTCTCGACCCAGGAAAAAAAAGAACTCGTTGCATGCATCAGTGTAGCGCGCG 8604 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 8605 TGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCC-CCAACTTCC 8656 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 9270 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 9327 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 9328 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 9387 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 9388 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 9447 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 9448 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 9500 >seq4286 Length=9999 Score = 206 bits (228), Expect = 4e-51 Identities = 193/236 (82%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | | |||| ||||||| |||||||||||||| | Sbjct 4541 GTACAAAGGGCAGGGACGTAATCAGCACAAGCT-GATGACTTATGCTTACTAGGAATT-C 4484 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCA-AAGAT 118 |||||| |||| | | |||| ||| |||||||||| | ||||| | ||| | ||||| Sbjct 4483 CTCGTTCAAGATCTATAATTCCAAAGATCTATCCCTAGCACGACATACATTATACAAGAT 4424 Query 119 TACCCGGACCTGTCGGCCA-AGGTGA-TAGA-CTCGTTGAATACATCAGTGTAGCGCGCG 175 |||||| || || | | ||| | || | || |||| ||| ||||||||||||||| Sbjct 4423 TACCCGTACTCTTCCGAGACAGGAAAGTAAAGCTTGTTGCATATGTCAGTGTAGCGCGCG 4364 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 |||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 4363 TGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTG 4308 >seq3262 Length=19006 Score = 168 bits (186), Expect = 1e-39 Identities = 176/229 (77%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| ||||||||||||| ||| ||| || ||||| || |||||||||||| | Sbjct 4578 GTACAAGGGGCAGGGACGTAATCATCGCACACT-GATGATATACGATTACTAGGAATT-C 4521 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||| |||| || |||||||| ||||||||| | |||||| || || || ||||| Sbjct 4520 CTGGTTCAAGATAAATAATTGCAAGCATCTATCCCAAGCACGATAAACGTTTAA-GATTA 4462 Query 121 CCCGGACCTGTCGGCCAAGG----------TGATAGACTCGTTGAATACATCAGTGTAGC 170 || ||| |||| ||| | ||| ||||||||| | |||| |||||| Sbjct 4461 GCCAATCCTTTCGGATAAGCAATAATAAATTTATATACTCGTTGAGTCTATCATTGTAGC 4402 Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219 |||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 4401 GCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCT 4353 >seq4254 Length=10165 Score = 122 bits (134), Expect = 1e-25 Identities = 183/242 (76%), Gaps = 25/242 (10%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| ||||| |||| ||||||| |||||| |||| |||| || | Sbjct 4621 GTACAAAGGGCAGG-ACGTAATCAA-GCGAGCT-GATGACGCGCG-TTACAAGAAG---- 4672 Query 61 CTCGT-TGAAGACCAACAATTGCAATGATCTATCCCCATCA-CGATGAAAT--TTCAA-A 115 ||||| | |||| || | |||||||| || || |||| ||||| || | ||| | Sbjct 4673 CTCGTATCAAGATCATAA--TGCAATGAATTAACCT-ATCAGCGATGCAAGCGTACAACA 4729 Query 116 GATTACCC--GGACCTGTCGGCCAAGGTGATAGA----CTCGTTGAATACA-TCAGTGTA 168 |||||||| || || ||| | ||| | | | ||||||| || || |||||||| Sbjct 4730 GATTACCCAAGGGCCGCTCGACGCAGGAAAAAAAAGAACTCGTTGCATGCAATCAGTGTA 4789 Query 169 GCG-CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CCTCAAACTT 226 ||| ||||| |||||| |||||||||||||||||||||||||||||| || | ||||| Sbjct 4790 GCGACGCGTTGCGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCCCAACTT 4849 Query 227 CC 228 || Sbjct 4850 CC 4851 >seq975 Length=177085 Score = 89.7 bits (98), Expect = 8e-16 Identities = 108/148 (73%), Gaps = 12/148 (8%) Strand=Plus/Plus Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | || ||| | |||||| || |||| | |||| |||| | ||| | Sbjct 108717 CTCGTTCATGATCAATACTTGCAAGTATGTATCTCTATCAGGATGCA--------GATCA 108768 Query 121 CCCGGACCTGTCGGCCAAGGTGATA----GACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||| ||| ||| | ||| | | ||| ||| | || ||||||| |||||||||| Sbjct 108769 CCCGGGCCTCTCGACGCAGGAAACAAAAGGACCCGTCGCATGCATCAGTCTAGCGCGCGT 108828 Query 177 GCGGCCCAGAACATCTAAGGGCATCACA 204 ||||||||| ||||||| |||||||||| Sbjct 108829 GCGGCCCAGGACATCTAGGGGCATCACA 108856 >seq133 Length=530177 Score = 84.2 bits (92), Expect = 3e-14 Identities = 65/77 (84%), Gaps = 4/77 (5%) Strand=Plus/Minus Query 156 ATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT----AAGGGCATCACAGACCTGT 211 |||||||||||||||||||| ||||||||| |||||| | |||||| |||||||||| Sbjct 71724 ATACATCAGTGTAGCGCGCGAGCGGCCCAGGACATCTATGGACGGGCATGACAGACCTGT 71665 Query 212 TATTGCCTCAAACTTCC 228 || |||| | |||| || Sbjct 71664 TAATGCCCCCAACTCCC 71648 >seq1668 Length=92382 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/58 (90%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58 ||||||||| ||||||| || |||| ||||||| ||||||||||| |||||||||||| Sbjct 4789 GTACAAAGGTCAGGGACTTAATCAATGCGAGCT-GATGACTCGCGTTTACTAGGAATT 4845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751902912805