Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq4075 161 6e-38 seq4457 131 9e-29 seq2843 127 1e-27 seq4286 120 2e-25 seq5475 100 2e-19 seq3262 89.7 3e-16 >seq4075 Length=11175 Score = 161 bits (178), Expect = 6e-38 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| ||| |||||| | |||||||| || Sbjct 2563 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGAGAGAGTCATGAAAATAACATCTTCC 2504 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2503 AATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 2447 >seq4457 Length=11085 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 6035 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 5976 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 5975 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 5919 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 9804 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 9863 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 9864 CATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 9920 >seq2843 Length=29081 Score = 127 bits (140), Expect = 1e-27 Identities = 101/120 (84%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 |||||||||||||||||||||||| ||||||| || ||||| |||| |||| | Sbjct 17131 GAACCCAAAGACTTTGATTTCTCGGAAGGTGCTGACGGAGTCCTGTAAAT--TAACGACC 17188 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 17189 GCCAATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 17248 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||| ||||||||||||| |||||||||| ||||| | |||||| || Sbjct 18458 GAACCTAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 18517 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 18518 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 18574 Score = 122 bits (134), Expect = 5e-26 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 6 CAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCC 65 |||| ||||||||||||| |||||||||| ||||| || |||||| ||||||| Sbjct 18816 CAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCGATCC 18875 Query 66 CTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 18876 CTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 18927 >seq4286 Length=9999 Score = 120 bits (132), Expect = 2e-25 Identities = 100/117 (85%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| || ||| | || || ||| || || Sbjct 4009 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGAT-GAGGCTTAA-GA-AACCTCACCA 3953 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||| || Sbjct 3952 -ATCCCTAGTCGGTATAGTTTATGGTTAAGACTAGGACGGTATCTGATCGTCTTTGA 3897 >seq5475 Length=4812 Score = 100 bits (110), Expect = 2e-19 Identities = 91/112 (81%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||| ||||||||||||||| ||||||| || ||||| |||| |||| | Sbjct 2774 GAACCCA--GACTTTGATTTCTCGGAAGGTGCTGACGGAGTCCTGTAAAT--TAACGACC 2829 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 || ||||||||||||||||||||| ||| |||||||||| ||||||| ||| Sbjct 2830 GCCAATCCCTAGTCGGCATAGTTTATGGTCAAGACTACGATGGTATCTAATC 2881 >seq3262 Length=19006 Score = 89.7 bits (98), Expect = 3e-16 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 49 ATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGAT 108 |||||||| | |||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 3971 ATAACATCTCAT-ATCCCTAGTCGGCATAGTTTACTGTTAAGACTACGACGGTATCTAAT 3913 Query 109 CGTCTTCGA 117 | ||||||| Sbjct 3912 CATCTTCGA 3904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278365216530