Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2843 257 3e-66 seq4286 250 5e-64 seq4457 242 7e-62 seq4075 219 8e-55 seq3262 172 1e-40 seq4254 104 4e-20 seq92 77.0 6e-12 seq1215 73.4 7e-11 >seq2843 Length=29081 Score = 257 bits (284), Expect = 3e-66 Identities = 211/250 (84%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC--TCGAATACATTAGCATG 131 |||||| |||||||||||||||||||||||||||| | || | | ||||||||||||| Sbjct 17495 TTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTAGGCCGTTGGATACATTAGCATG 17436 Query 132 GAATAATAGAATAGG---ACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 ||||||| ||||| ||| |||| ||||||||||||||| | | | |||||| Sbjct 17435 GAATAATGAGATAGGGCCACGA-CGGT-CTATTTTGTTGGTTTGCACGTT-GTGGTAATG 17379 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||| | || |||||| | |||||||||||||||||||||||||||||||||| Sbjct 17378 ATTAACAGGAACGGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 17319 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||||| ||||||||||||||| || ||||||||||||||||||||||| |||||| Sbjct 17318 ATGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 17260 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 17259 AAGTTAGGGG 17250 Score = 237 bits (262), Expect = 3e-60 Identities = 202/245 (82%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 19171 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 19112 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 19111 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 19053 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 19052 CAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 18993 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 18992 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 18934 Query 314 AGGGG 318 |||| Sbjct 18933 GGGGG 18929 Score = 232 bits (256), Expect = 1e-58 Identities = 202/247 (82%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATG 131 |||| ||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||| Sbjct 18820 TTTTGCTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATG 18761 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 | |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||| Sbjct 18760 GGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGATT 18702 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 18701 AACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATG 18642 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct 18641 AAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAG 18583 Query 312 TTAGGGG 318 || |||| Sbjct 18582 TTGGGGG 18576 Score = 215 bits (238), Expect = 9e-54 Identities = 199/247 (81%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131 |||||||| ||||||||||||||||||| |||||||||| || |||||| |||||||| Sbjct 5011 CTTTTACTGTGAAAAAATTAGAGTGTTCCAAGCAGGCCTAGCCT-GAATACCTTAGCATG 4953 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||| ||||||| | || || |||||||||| | | || ||||||||| Sbjct 4952 GAATAATAACATAGGACTGTCTGTG--ATGTTGTTGGTTTGCATC-CAGCGGTAATGATT 4896 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||||| ||||||| | |||||| |||||||||||||||||||||||| | Sbjct 4895 AATAGGGACGATCGGGGGCATTTCTATTCAGCAGTCAGAGGTGAAATTCTTGGATTTGCT 4836 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| |||| |||||||||||| |||||| |||||||||||||| ||||||||| Sbjct 4835 GAAGAGAAACTGCTGCGAAAGCGTCTGCCAAGGGCGTTTTCATTAATCA-AGAACGAAAG 4777 Query 312 TTAGGGG 318 | ||||| Sbjct 4776 TCAGGGG 4770 Score = 129 bits (142), Expect = 1e-27 Identities = 111/136 (82%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||| ||| | |||| | |||| | ||||||||||||||||||| Sbjct 28095 GTAATGATTAATAGGGACAGTTGTGGGTATTCATATTTCAATGTCAGAGGTGAAATTCTT 28036 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||| | |||| ||| | ||||||||| || |||||||||||||||||||||| | Sbjct 28035 GGATTTTTGAAAGATGAACAAGTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCTG- 27977 Query 303 GAACGAAAGTTAGGGG 318 || | ||||| |||| Sbjct 27976 GAGCAAAAGTCGGGGG 27961 Score = 96.9 bits (106), Expect = 6e-18 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 19280 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 19221 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTC 172 || |||| | |||||| | |||| ||||| ||||||||| Sbjct 19220 GGGATAACATTATAGGA-TTTCGGTCCTATTACGTTGGTTTC 19180 >seq4286 Length=9999 Score = 250 bits (276), Expect = 5e-64 Identities = 206/246 (84%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||||||||||||||||| | |||||| ||||| | |||| |||||||| Sbjct 3654 TTTACTTTGAAAAAATTAGAGTGTTTCAGGCAGGCAATTGCTTGGATACTGCAGCATGGA 3713 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAG-GACCGCCGTAATGATTA 192 ||||| ||||||||| | | |||||| |||||||||| | | | |||||||||| Sbjct 3714 ATAATGGAATAGGACTTT--GACCTATTT-GTTGGTTTCTTGAGGTCAAAGTAATGATTA 3770 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||||| ||| ||||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 3771 ATAGGGACAGTTGGGGGCATCCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATTA 3830 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||| ||||||||| || |||||||||||||||||||||| |||||||||| Sbjct 3831 AAGACGAACTTATGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGT 3889 Query 313 TAGGGG 318 |||||| Sbjct 3890 TAGGGG 3895 >seq4457 Length=11085 Score = 242 bits (268), Expect = 7e-62 Identities = 205/248 (83%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||| Sbjct 5672 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 5731 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 5732 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 5790 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 5791 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 5850 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 5851 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 5909 Query 311 GTTAGGGG 318 ||| |||| Sbjct 5910 GTTGGGGG 5917 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 10203 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 10144 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 10143 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 10085 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 10084 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 10025 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 10024 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 9965 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 9964 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 9928 >seq4075 Length=11175 Score = 219 bits (242), Expect = 8e-55 Identities = 204/254 (80%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 68 AGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGC-TCGAATACAT 124 ||||| |||||||||| ||||||||||||| ||||||||| | | || | |||||||| Sbjct 2194 AGGACAATTACTTTGAACAAATTAGAGTGTTTAAAGCAGGCATACTCGCCTTGAATACAT 2253 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||| |||||| | ||||||||||||||||||| ||||| || Sbjct 2254 TAGCATGGAATAACCACTTAGGACTTT-GGTTCTATTTTGTTGGTTTTAAGGACTAAAGT 2312 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||| ||| | || |||| | |||||| | ||| |||||||||||||||| | Sbjct 2313 AATGATTAACAGGAACCGTTGGGGCCATTAGTATTTAGTTGCCAGAGGTGAAATTCTTAG 2372 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 | ||| |||||||||| |||||||||| | |||||| |||||||||||||| || Sbjct 2373 ACTTACGAAAGACTAACTTCTGCGAAAGCACTTGGCAAGGAGGTTTTCATTAATCA-AGA 2431 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 2432 ACGAAAGTTAGGGG 2445 >seq3262 Length=19006 Score = 172 bits (190), Expect = 1e-40 Identities = 192/251 (76%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG---CTC-GAATACATTAGCA 129 |||||||||| |||||||||||||| || |||| | ||| | | ||||| ||||||| Sbjct 3655 TTTACTTTGAGAAAATTAGAGTGTTTAAGGCAGCCTCTTGGGGCACTGAATATATTAGCA 3714 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCT--ATTTTGTTGGTTTCTAGGACCGCCGTAAT 187 ||| |||||| ||||||| | | || | ||||||||||| | || |||| Sbjct 3715 TGGGATAATAAAATAGGA--TTCATATCATAAATTTGTTGGTTTGAATGATGTAAATAAT 3772 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||||||| ||| |||||| | |||| || || || |||||||| | ||||| Sbjct 3773 GATTAATAGGGACAGTTGGGGGTATTTATATTGGATGGTTAGCGGTGAAATGCATGGATC 3832 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 ||| |||| ||||| |||||||| || ||||||||||||||||||||||| ||||| Sbjct 3833 CATTCAAGATAAACTAAAGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACG 3891 Query 308 AAAGTTAGGGG 318 || |||| ||| Sbjct 3892 AAGGTTAAGGG 3902 >seq4254 Length=10165 Score = 104 bits (114), Expect = 4e-20 Identities = 186/254 (73%), Gaps = 22/254 (9%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCA-AAGCAGGCCTTT--GC--TCGAATACATTAGC 128 |||||| |||||| |||||||||||| |||||| |||| || | | || | |||| Sbjct 5513 TTTACTGTGAAAAGTTTAGAGTGTTCATAAGCAG--CTTTAGGCCGTTGGAT-CTGTAGC 5457 Query 129 ATGGAATAATAGAATAGGACGTG-CGGTTCTATTTTGTTGGTTTCTAGGACCGC-CGTAA 186 |||||| || ||| | | | |||| |||||||||||||| | | | |||| Sbjct 5456 -TGGAATCATGAGATACGGCCCGACGGTCATATTTTGTTGGTTTGCACGTTTGTGCGTA- 5399 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAG-AGGTGAAATTCTTGGA 245 ||||||| ||| || ||| || ||||||| |||||| |||||||||||||||| Sbjct 5398 TGATTAACAGGACGCGTGGGGCTATTCGGTATTCA--TGTCAGTAGGTGAAATTCTTGGA 5341 Query 246 TTTA-TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 |||| || |||| |||| |||| |||| ||||||||||||| ||||||| Sbjct 5340 TTTATTTTGAGACGAACT-CTGC--AAGCCAATTTCAAGGATGTTTTCTGTAATCAG--- 5287 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 5286 ACGAAAGTTAGGGG 5273 >seq92 Length=590448 Score = 77.0 bits (84), Expect = 6e-12 Identities = 93/125 (74%), Gaps = 10/125 (8%) Strand=Plus/Minus Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA- 214 |||||||||||||||| | | | ||||||||| | ||| | || |||||| | Sbjct 323692 TCTATTTTGTTGGTTTGCACGTT-GTGGTAATGATTCACAGGAACGGTTGGGGGTCGTAT 323634 Query 215 --GTATTCAATTGTCAGAGGTGAAATTCT------TGGATTTATTGAAGACTAACTACTG 266 || |||||||||||||||| ||||||| |||||||| ||| || |||||||| Sbjct 323633 TCGTGTTCAATTGTCAGAGGTTAAATTCTAGTTCTTGGATTTACGGAAAACAAACTACTG 323574 Query 267 CGAAA 271 ||||| Sbjct 323573 CGAAA 323569 >seq1215 Length=140990 Score = 73.4 bits (80), Expect = 7e-11 Identities = 82/107 (77%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||| | | | | |||| |||||| ||| | || |||| || | Sbjct 132733 TCTATTTTGTTGGTATGCACGTT-GTGGTAAGGATTAACAGGAACGGTTGGGGTATTC-G 132790 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACT 262 |||||| ||||| ||||||||||||||||||| || ||||| |||| Sbjct 132791 TATTCAGTTGTCGGAGGTGAAATTCTTGGATTAATGAAAGACGAACT 132837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915078031296