Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq12980 197 1e-48 seq3561 178 1e-42 seq6130 167 2e-39 seq7909 143 3e-32 >seq12980 Length=518 Score = 197 bits (218), Expect = 1e-48 Identities = 163/197 (83%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTC--GTCATCTAAA 59 || |||||||||||||||||||||||||||||||||||| |||||||| || | | Sbjct 400 TATCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCGACCACTTCACGTGAACCTCG 341 Query 60 AGATAA---CTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGC 116 | ||| |||||||||||||| | ||||||| |||||||||||||||| ||||| Sbjct 340 CGGTAAACGCTCGTCATCAGCTCTCAGCCTTAGTCGCCCGGATTTACCTAAGCAACCAGC 281 Query 117 CTACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCAT 176 |||| ||||||||| |||||||||||||| | ||||||||||| |||||||||||||| Sbjct 280 CTACAACCTTAAACAGGGACAACCAACGCCCTGATGGCCTAGCCTACTCCGTCCCTCCAT 221 Query 177 CGCATTAACCAGAAGTA 193 |||| || ||||||| Sbjct 220 CGCAATATAAAGAAGTA 204 >seq3561 Length=15242 Score = 178 bits (196), Expect = 1e-42 Identities = 159/196 (81%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCAT--CTAAA 59 || |||||||||||||||||||| ||||||||||||||| |||||||| || | || Sbjct 43 TATCTGAAGCTTAGAAGCTTTTCCTGGAAGCATGGCATCGACCACTTCATCCTGACTCTC 102 Query 60 AG-ATAACTCGTCATCAGCTCCCGGCCT--TAGAATCCCGGATTTACCTAAGATTCCAGC 116 | | |||||||||||||||| | |||| | | |||||||||||||| | |||| Sbjct 103 ATCAGAACTCGTCATCAGCTCTCAGCCTAGTGTACGTCCGGATTTACCTAAACATACAGC 162 Query 117 CTACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCAT 176 |||| ||||||||| ||||||||| |||| ||||||||||||| |||||||||||||| Sbjct 163 CTACAACCTTAAACGCGGACAACCATCGCCGCGCTGGCCTAGCCTACTCCGTCCCTCCAT 222 Query 177 CGCATTAACCAGAAGT 192 |||| || |||||| Sbjct 223 CGCAATATAAAGAAGT 238 >seq6130 Length=3286 Score = 167 bits (184), Expect = 2e-39 Identities = 155/197 (79%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCA-----TCT 56 || |||||||||||| ||||||| |||||| ||||||||||||||||| || ||| Sbjct 2679 TAGCTGAAGCTTAGAGGCTTTTCCTGGAAGTATGGCATCAACCACTTCATCCGCGGCTCT 2620 Query 57 AAAAGATAACTCGTCATCAGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGC 116 ||||||||||||||| |||||| |||||||||||||||| ||||| Sbjct 2619 CGCCTTGGACTCGTCATCAGCTCTCGGCCTCGATCGCCCGGATTTACCTAAGCAACCAGC 2560 Query 117 CTACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCAT 176 |||| ||||||||| |||| ||||||||| | ||||||||||| ||||||||| |||| Sbjct 2559 CTACAACCTTAAACAGGGACTACCAACGCCCTGATGGCCTAGCCTGCTCCGTCCCCCCAT 2500 Query 177 CGCATTAACCAGAAGTA 193 |||| || ||||||| Sbjct 2499 CGCACTATGAAGAAGTA 2483 >seq7909 Length=1341 Score = 143 bits (158), Expect = 3e-32 Identities = 147/187 (79%), Gaps = 9/187 (5%) Strand=Plus/Plus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 ||||||||||||||||| ||||| |||||| |||||||| || ||||| || ||||| | Sbjct 312 TACCTGAAGCTTAGAAGATTTTCCTGGAAGTATGGCATCGACTACTTCTTC-TCTAAC-G 369 Query 62 ATAACTCGTCATCAGCTCCCGGCCTTA----GAATCCCGGATTTACCTAAGATTCCAGCC 117 | || ||||||||| || | | | | ||| |||||||||||||| || || Sbjct 370 AGAA-TCGTCATCACGTCTCAGATTAACGAGGAA--CCGGATTTACCTAATCCCCCTACC 426 Query 118 TACCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATC 177 ||| ||||||| |||||||||||||| ||| ||||||||||||||||| ||||||| Sbjct 427 TACACGCTTAAACACGGACAACCAACGCCGTGCTAGCCTAGCCTTCTCCGTCTCTCCATC 486 Query 178 GCATTAA 184 ||| ||| Sbjct 487 GCAGTAA 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518333071806