Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4604 165 8e-39 seq5349 123 2e-26 seq4587 123 2e-26 seq4750 105 6e-21 seq3561 104 2e-20 seq6130 98.7 9e-19 seq5238 95.1 1e-17 seq4107 95.1 1e-17 seq3854 89.7 5e-16 seq3415 89.7 5e-16 seq3950 86.0 6e-15 seq11098 84.2 2e-14 seq4709 73.4 4e-11 >seq4604 Length=8381 Score = 165 bits (182), Expect = 8e-39 Identities = 141/173 (82%), Gaps = 7/173 (4%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || ||||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||| Sbjct 4454 GGGGGATGCCTAGGTTCTCAGAGGCGATGAAGGACGTGCTAAGCTGCGAAAAGCTACGGG 4513 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || ||||| | | |||||||||||||||||||||||||||||||| | |||| ||| Sbjct 4514 GAACTGCACAGAAGTTTTGATCCGTAGATATCCGAATGGGGCAACCCGGCAGATTGAAGA 4573 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 | | || | || ||| || ||| |||||||||||||||||||||| Sbjct 4574 TCTGTC--ACCGAGAGG-----AGCAAACCCGGGGAACTGAAACATCTAAGTA 4619 Score = 136 bits (150), Expect = 4e-30 Identities = 135/173 (78%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||| ||||||| ||| ||| |||||||||| |||||||||| |||||||||| Sbjct 3382 GGGGGATGCCTTGGCTCTCAGAGACGATGAAGGACGTGTTAAGCTGCGATAAGCTACGGG 3441 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || ||||| | | ||| |||||||||| ||||||||||||||||| ||| ||| Sbjct 3442 GAGCTGCACAAAAGCATTAATCCGTAGATTTCCGAATGGGGCAACCCAGCTGGTTGAAGA 3501 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 | || ||| ||| ||| ||| |||||||||||||||||||||| Sbjct 3502 CCAGTTAT-CCGCAAGG----AGGTAAACCCGGGGAACTGAAACATCTAAGTA 3549 >seq5349 Length=5186 Score = 123 bits (136), Expect = 2e-26 Identities = 141/187 (75%), Gaps = 7/187 (4%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| ||| || ||||||| |||||||||| || ||||||||||| Sbjct 364 GGCATTCGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGAAAAG 423 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 ||||||||| || | | ||||||||| ||||||||||||||| ||||| Sbjct 424 CTACGGGGAGGTGCGAACAACCTTTGATCCGTGGATATCCGAATGGGGAAACCCACCGCT 483 Query 121 TTGGAGATAT----ATCATAACGC-TAGG--CGTTAGGCGAACGTGGGGAACTGAAACAT 173 | || | ||| ||| || | |||| | |||||||| ||||||||||||||| Sbjct 484 TAGGCGGTATTGTCATCTGAATACATAGGATGGCAAGGCGAACCCGGGGAACTGAAACAT 543 Query 174 CTAAGTA 180 ||||||| Sbjct 544 CTAAGTA 550 >seq4587 Length=8477 Score = 123 bits (136), Expect = 2e-26 Identities = 133/175 (76%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||| | | Sbjct 3234 ACGGGGGATGCCTAGGCTCTCAGAGACGACGAAGGACGTGATAAGCTGCGAAAAGCCATG 3293 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGA 125 |||| ||| ||| |||||||| | ||| ||||||||||| |||||| ||| | Sbjct 3294 GGGAGGTGCAAATAACCATTGATCCATGGATGTCCGAATGGGGAAACCCGGCCACTTGAA 3353 Query 126 GATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || || | || || || | ||| ||||||||||||||||||||| Sbjct 3354 GAGTGGTCGT--CGAAAGACGGT-----AACCCAGGGAACTGAAACATCTAAGTA 3401 >seq4750 Length=7679 Score = 105 bits (116), Expect = 6e-21 Identities = 129/173 (75%), Gaps = 16/173 (9%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || |||||||| || | | ||||||| ||||||||||| |||||||| |||||||||| Sbjct 5552 GGGGGATGCCTTGGGTTCCAGAGGCGATGAAGGACGTGACCAGCTGCGATAAGCTACGGG 5611 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || || ||| | ||||||||| ||| |||||||||||||||||| | | | | Sbjct 5612 GAGCTGCTGATAAGCTTTGATCCGTTGATTTCCGAATGGGGCAACCCG-TCTGT-----A 5665 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || | || | |||| |||||| || ||||||||||||||||||| Sbjct 5666 TAGA-CACA----TAGG-----AGCGAACCTGCTGAACTGAAACATCTAAGTA 5708 >seq3561 Length=15242 Score = 104 bits (114), Expect = 2e-20 Identities = 147/199 (74%), Gaps = 22/199 (11%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTA------GGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCG 55 ||| |||||||||||||| ||| || ||||||| ||||||||| || ||||| Sbjct 1626 GCACACGGTGGATGCCTATGCCTTGGCAGTCAGAGGCGATGAAGGACGTTGTAGCCTGCG 1567 Query 56 AAAAGCTACGGGGA-TTGGC--ACATACGAATTGATCCGTAGATATCCGAATGGGG---- 108 ||||||| |||||| | ||| ||| || |||||||| |||| ||||||||||| Sbjct 1566 AAAAGCTTCGGGGAGTCGGCTAACAGAC--TTTGATCCGGAGATGTCCGAATGGGGAAAC 1509 Query 109 CAACCCGATATA--TTGGAGATATATCA--TAACGC-TAGGCGT--TAGGCGAACGTGGG 161 | |||| || || |||| || || || | |||| || ||||||||| ||| Sbjct 1508 CCACCCAATGTAAGTTGGGTATCCTGCACTGAATACATAGGTGTAGGAGGCGAACGAGGG 1449 Query 162 GAACTGAAACATCTAAGTA 180 ||||||||||||||||||| Sbjct 1448 GAACTGAAACATCTAAGTA 1430 >seq6130 Length=3286 Score = 98.7 bits (108), Expect = 9e-19 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||||||||| || ||||||||||| Sbjct 1101 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAGGACGTTGTAGCCTGCGAAAAGC 1160 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| | |||| | | |||||||| || | ||||||||||| ||||| Sbjct 1161 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGGTGTCCGAATGGGGAAACCC 1214 >seq5238 Length=5540 Score = 95.1 bits (104), Expect = 1e-17 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||| || || ||||||| ||||||||||| | ||||||||||| Sbjct 2997 GGCATTCGGTGGATGCCTTGGTGCTGAGAGGCGATGAAGGACGTGACACGCTGCGAAAAG 2938 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 | ||||| || || | |||||||| ||||||||||||||| |||||| Sbjct 2937 CCGTGGGGAGCTGCGAGTAAGCTTTGATCCGCGGATATCCGAATGGGGAAACCCG 2883 >seq4107 Length=10989 Score = 95.1 bits (104), Expect = 1e-17 Identities = 139/191 (73%), Gaps = 12/191 (6%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | ||||||| |||||||||| ||| ||||||||||| Sbjct 8518 GCACATGGTGGATGCCTTGGCGATAAGAGGCGATGAAGGACGTGGTAATCTGCGAAAAGC 8459 Query 62 -TACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-GATAT 119 || | | || | | | | |||| || ||| ||||||||||||||||| |||| Sbjct 8458 GTAGGCGAGCTGATAAACAAGCTTTGACCCTGCGATCTCCGAATGGGGCAACCCTTATAT 8399 Query 120 AT-TGGAGATATATCA-TAAC------GCTAGG--CGTTAGGCGAACGTGGGGAACTGAA 169 | ||| ||| |||| |||| |||| | |||||||| || |||||||| Sbjct 8398 CTGCGGATATAAATCATTAACTGAATACATAGGTTAATGAGGCGAACCCGGCGAACTGAA 8339 Query 170 ACATCTAAGTA 180 ||||||||||| Sbjct 8338 ACATCTAAGTA 8328 >seq3854 Length=12711 Score = 89.7 bits (98), Expect = 5e-16 Identities = 139/192 (72%), Gaps = 14/192 (7%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | ||||||| ||||||||| ||| ||||||||||| Sbjct 4686 GCACATGGTGGATGCCTTGGCGATAAGAGGCGATGAAGGACGTAGTAATCTGCGAAAAGC 4627 Query 62 TACGGGGATTGGCACATACGA--ATTGATCCGTAGATATCCGAATGGGGCAACCC-GATA 118 ||||| | | | |||| |||| || ||| ||||||||||||||||| ||| Sbjct 4626 GTAGGGGAGCTG-ATAAACGAGCTTTGAGCCTACGATGTCCGAATGGGGCAACCCACATA 4568 Query 119 -TATTGGAGATATATCA-TAAC------GCTAGG--CGTTAGGCGAACGTGGGGAACTGA 168 | | || || ||||| |||| |||| | |||||||| || ||||||| Sbjct 4567 CTTTAGGGTATGTATCATTAACTGAATACATAGGTTAATGAGGCGAACCCGGCGAACTGA 4508 Query 169 AACATCTAAGTA 180 |||||||||||| Sbjct 4507 AACATCTAAGTA 4496 >seq3415 Length=16941 Score = 89.7 bits (98), Expect = 5e-16 Identities = 134/185 (72%), Gaps = 14/185 (8%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| ||||||| |||||||||| || || ||||| ||| |||| Sbjct 16913 GGTGGATGCCTTGGCAGCTAGAGGCGATGAAGGACGTGGTAGGCCACGAAAGGCTTCGGG 16854 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGG----CAACCCGATATATT 122 || | || | | | |||||||| || | ||||||||||| | ||||||| ||| Sbjct 16853 GAGCAGTCAAACATGCTTTGATCCGGAGGTGTCCGAATGGGGAAACCCACCCGATTTATC 16794 Query 123 GGAGAT--ATATCATAACGC-TAGGCGTT----AGGCGAACGTGGGGAACTGAAACATCT 175 || || || | || | ||| ||| ||||||||| || |||||||||||||| Sbjct 16793 GGGTATCCTTAACTGAATACATAG--GTTAAGGAGGCGAACGCGGAGAACTGAAACATCT 16736 Query 176 AAGTA 180 ||||| Sbjct 16735 AAGTA 16731 >seq3950 Length=12057 Score = 86.0 bits (94), Expect = 6e-15 Identities = 90/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| ||||| |||||| || | |||||||| ||||||||| |||||||| ||| Sbjct 9086 GGCATGCGGTGAATGCCTTGGTACCAGGAGGCGATGAAGGACGTAGGTAGCTGCGATAAG 9027 Query 61 CTACGGGGATTGGCACATACGAATT--GATCCGTAGATATCCGAATGGGGCAACCC 114 || |||||| | || | ||||| | |||||| |||| ||||||||||| ||||| Sbjct 9026 CTTCGGGGAGTTGCT-ACACGAACTCTGATCCGGAGATTTCCGAATGGGGAAACCC 8972 >seq11098 Length=653 Score = 84.2 bits (92), Expect = 2e-14 Identities = 132/181 (73%), Gaps = 10/181 (6%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||||| |||||||||| || ||||||| |||| ||| Sbjct 292 GGTGGATGCCTTGGCGCATGGAGGCGATGAAGGACGTGTTAGGCTGCGATAAGCCTGGGG 351 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAG 126 || || || | | | ||||||| ||| ||||||||||| ||||| | || | | Sbjct 352 GAGCTGCCAAAGA-GCTTTGATCCCGGGATGTCCGAATGGGGAAACCC-ACCCCTTTGGG 409 Query 127 ATAT----ATCATAACGC-TA-GGCGTT-AGGCGAACGTGGGGAACTGAAACATCTAAGT 179 ||| | | || | || || ||| |||| |||| |||||| |||||||||| ||| Sbjct 410 GTATTGGCACCTGAATACATAGGGTGTTGAGGCAAACGCGGGGAATTGAAACATCTTAGT 469 Query 180 A 180 | Sbjct 470 A 470 >seq4709 Length=7877 Score = 73.4 bits (80), Expect = 4e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| ||||||||| | | ||||| |||| | ||| Sbjct 6190 GGTGGATGCCTTGGCACTGAGAGGCGATGAAGGACGTAGCACGTTGCGATAAGCCATGGG 6249 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 || || | ||||||||| ||| ||||||||||| |||||| Sbjct 6250 GAGATGCGAGCAATCTTTGATCCGTGGATTTCCGAATGGGGAAACCCG 6297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476738442587