Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4286 316 3e-84 seq4075 304 2e-80 seq2843 289 5e-76 seq4457 284 2e-74 seq3262 269 4e-70 seq4254 118 2e-24 seq133 78.8 1e-12 >seq4286 Length=9999 Score = 316 bits (350), Expect = 3e-84 Identities = 220/247 (89%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 4379 GTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCT 4320 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC---CATA 131 ||||||||| | ||| | | ||| ||||||||||||||| |||| || | |||| Sbjct 4319 CAAACTTCCTTGTGCTTGCACACAA-AGTCCCTCTAAGAAGTTAGCCTCCTATTTACATA 4261 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | ||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 4260 G---AAGTAACTAGTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAAT 4204 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 4203 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTTTCA 4144 Query 252 ATCTGTC 258 ||||||| Sbjct 4143 ATCTGTC 4137 >seq4075 Length=11175 Score = 304 bits (336), Expect = 2e-80 Identities = 226/261 (87%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 2950 ACTCGTTGCATTCATCAGTGTAGCGCGCGTGCGGCCCAGGACATCGAAGGGCATCACAGA 2891 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||||||||||||| |||| | | | ||| ||||||||||||||| || Sbjct 2890 CCTGTTATTGCCTCAAACTTCCTTTGGTTTAACACGCAAAAGTCCCTCTAAGAAGTTCGC 2831 Query 121 CACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 ||| | | | | ||| | | |||||||| |||||||||||||||||||||||| || Sbjct 2830 CACGATCAGGATT-GATCGCGTAACTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAA 2772 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2771 TTAAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCGTAGAATCA 2712 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 2711 AGAAAGAGCTCTCAATCTGTC 2691 >seq2843 Length=29081 Score = 289 bits (320), Expect = 5e-76 Identities = 225/263 (86%), Gaps = 10/263 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16745 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 16804 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 16805 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 16862 Query 120 CCACCAAC---CATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 || | | || || || | ||| |||||||| | ||||||||||||||| ||| Sbjct 16863 CCGCGGAGGGTCACCTCCGCATAG--CTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG 16920 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 16921 AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 16980 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 ||||| |||||| ||| |||||| Sbjct 16981 CAAGAGAGAGCTCTCAGTCTGTC 17003 Score = 284 bits (314), Expect = 2e-74 Identities = 221/263 (84%), Gaps = 14/263 (5%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 4275 ACTCGTTGGACTAGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 4334 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||| | ||||||||| | || || | ||||||||||||||||| | Sbjct 4335 CCTGTTATTGCCCCCAACTTCCATCGACTTGACATCGATAGTCCCTCTAAGAAGATA--- 4391 Query 122 ACCAACCATAGTCGATGGGGCT-AT-----TTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 | ||| |||||| | || || |||||||| |||||||||||||||||| Sbjct 4392 -----CAATACTCGATGAGCCTGATCTACATTAGCAGGCGGGGGTCTCGTTCGTTATCGG 4446 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4447 AATCAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAAT 4506 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| |||||||||| Sbjct 4507 CAAGAAAGAGCTTTCAATCTGTC 4529 Score = 214 bits (236), Expect = 3e-53 Identities = 204/257 (79%), Gaps = 13/257 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 27432 GTCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 27491 Query 75 CAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAG--CCAGC----CACCAAC 127 | |||||||| | || || | || ||||| || || | || |||| | Sbjct 27492 CTCACTTCCATGGACTAAAACATCCATTGTCCCGTTAGGAGTTTCAAGTAGATCACCTAT 27551 Query 128 CATAGTC-GA-----TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || | || ||| | | || || |||||||||||||||||||||| || Sbjct 27552 CACAAAATGAATAAGTGGAAACAACCAACATGTAGAGGTCTCGTTCGTTATCGGAATCAA 27611 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 27612 CCAGACAAGTCACCCCACCAACTAAGAACGGCCATGCACCACCACCCATAAAATCAAGAA 27671 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 27672 AGAGCTCTCAATCTGTC 27688 >seq4457 Length=11085 Score = 284 bits (314), Expect = 2e-74 Identities = 223/261 (85%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 8576 ACTCGTTGCATGCATCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGA 8635 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||| ||| ||||| | || | | || | |||||||||||||||| ||| Sbjct 8636 CCTGTTATTGCCCCAA-CTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGCGAGC- 8693 Query 122 ACCAAC-CATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 ||| || || | || | |||||||||||| |||||||||||||| ||||| Sbjct 8694 ACCTACACAGAAGCGTAAGCCACACTATTTAGCAGGCGG-GGTCTCGTTCGTTAACGGAA 8752 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8753 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 8812 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 8813 AGAAAGAGCTCTCAATCTGTC 8833 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 9428 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 9486 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 9487 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 9545 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 9546 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 9605 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 9606 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 9665 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 9666 ATCAATCTGTC 9676 >seq3262 Length=19006 Score = 269 bits (298), Expect = 4e-70 Identities = 221/265 (83%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || || ||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 4426 TACTCGTTGAGTCTATCATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAG 4367 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGC--- 116 ||||||||| |||| | ||||| ||| | || ||||||||||||||||||| Sbjct 4366 ACCTGTTATCGCCTTTA-CTTCCTTTGATTTAAAAATCAATAGTCCCTCTAAGAAGTATT 4308 Query 117 --CAGCCACCAACCATAGTCGATGGGGCTATTTAGCA-GGTTAAGGTCTCGTTCGTTATC 173 || | | ||| || | || |||||||| | ||| |||||||||||||||||| Sbjct 4307 AACATCTATCAAAAATGATAAATTATACTATTTAGTATGGTAAAGGTCTCGTTCGTTATC 4248 Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 4247 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATTAA 4188 Query 234 ATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||||||||||||||| Sbjct 4187 ATCATGAAAGAGCTATCAATCTGTC 4163 >seq4254 Length=10165 Score = 118 bits (130), Expect = 2e-24 Identities = 186/252 (74%), Gaps = 21/252 (8%) Strand=Plus/Plus Query 16 TCAGTGTAGCG-CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CC 73 ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| || Sbjct 4782 TCAGTGTAGCGACGCGTTGCGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCC 4841 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC-CA--T 130 | ||||||| | || | || | ||| || || | || || |||| || || Sbjct 4842 CCCAACTTCCTTCGGTATCA--CCGAAAGT--CTTGAAAAGGCGAGGCACCTACGCAAGA 4897 Query 131 AGTCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | || |||||||||||| |||| ||||||| || |||||||||||| Sbjct 4898 AGCGTAAGGCCACACTATTTAGCAGGCGGGGGTCCGTTTCGTTAACGAAATTAACCAGAC 4957 Query 188 AAATCACTCCAC-CAACTAAGAACGGCCATGCACCA--CCACCCATAGAATCAAGAAAGA 244 || |||||||| |||| | ||||||||| ||||| | ||||| |||| ||||||| Sbjct 4958 AATACACTCCACGCAAC--AAAACGGCCAT-CACCAACCAACCCAAAGAA--CAGAAAGA 5012 Query 245 GCTATCAATCTG 256 || ||||||| Sbjct 5013 -CTTCCAATCTG 5023 >seq133 Length=530177 Score = 78.8 bits (86), Expect = 1e-12 Identities = 83/109 (76%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCT----AAGGGCATCACAGACCTGTTATTG 71 ||||||||||||||| ||||||||| |||||| | |||||| |||||||||||| || Sbjct 71719 TCAGTGTAGCGCGCGAGCGGCCCAGGACATCTATGGACGGGCATGACAGACCTGTTAATG 71660 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 || | |||| || | || | || || ||| ||||||||| ||| Sbjct 71659 CCCCCAACTCCCTTCGGTAAGTCACCGGAAGCCCCCCTAAGAAGCGAGC 71611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796697128887