Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq4790 237 3e-60 seq3950 217 3e-54 seq5349 197 3e-48 seq4604 197 3e-48 seq6825 192 1e-46 seq5238 179 7e-43 seq4587 172 1e-40 seq247 172 1e-40 seq4107 161 2e-37 seq3429 150 4e-34 seq34 93.3 8e-17 seq5390 86.0 1e-14 seq2601 84.2 4e-14 seq155 78.8 2e-12 >seq4790 Length=7436 Score = 237 bits (262), Expect = 3e-60 Identities = 188/226 (83%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 114 ACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCC 173 ||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||| || Sbjct 6086 ACACTGTCAGTTGGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGTGTAACGGAGGAGCT 6027 Query 174 CAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTT 233 ||||| |||||||||| ||| ||| || || ||| | || | ||||| | ||||||| || Sbjct 6026 CAAAGGTACCCTCAGCCTGGTTGGCAATCAGGCGTAGAGCGTAAAGGTATAAGGGTGCTT 5967 Query 234 GACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCT 293 ||||| || || | ||| | ||| |||||||||||| |||| |||||||||||| | Sbjct 5966 GACTGTGAGACTAATACGTCGAACAGAGACGAAAGTCGGACTTAGTGATCCGGCGGTTCC 5907 Query 294 GAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||| ||||||||||| || |||||||| ||| ||||||||| Sbjct 5906 GAATGGAAGGGCCGTCGCTCAACAGATAAAAGGTACTCTGGGGATA 5861 >seq3950 Length=12057 Score = 217 bits (240), Expect = 3e-54 Identities = 235/310 (76%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC 89 |||||||| | | |||||| | || |||| |||| || |||| |||||||| Sbjct 6805 ACGCCAGTCTGCGTGGAGCCAAAGGTGAAATACCACCCTGATTAGTCTGGAATTCTAACC 6746 Query 90 GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGC 149 | ||| | ||| ||||||| |||| | |||| |||||||||||||||||||| Sbjct 6745 GTGGCCCGTC-ATCCGGGTCCGGGACACTGTCTGGCGGGTAGTTTGACTGGGGCGGTCGC 6687 Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCA 209 |||| ||| |||||||||||||| | ||| | ||||||| || ||||||||| || | Sbjct 6686 CTCCTAAAAAGTAACGGAGGCGCGCGAAGGTTCCCTCAGGCTGATTGGAAACCAGCCGAA 6627 Query 210 CAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGT 269 |||||||| ||| ||||| | |||||||||| ||| | ||| |||||| |||||||| Sbjct 6626 GAGTGCAAAAGCATAAGGGAGCTTGACTGCGAGACCGACGGGTCGAGCAGGTACGAAAGT 6567 Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 || ||| |||||||| ||| | | ||||| |||| |||||| ||||||||||| ||| Sbjct 6566 AGGCTTTAGTGATCCGGTGGTCCCGTGTGGAAGGGCCATCGCTCAACGGATAAAAGGTAC 6507 Query 330 CCTGGGGATA 339 | ||||||| Sbjct 6506 TCCGGGGATA 6497 >seq5349 Length=5186 Score = 197 bits (218), Expect = 3e-48 Identities = 242/324 (75%), Gaps = 10/324 (3%) Strand=Plus/Plus Query 19 AAGAGATGGATACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTG 78 ||| ||||| |||||| || |||||| | ||| |||| ||| | | | || Sbjct 2347 AAGCGATGG---CGCCAGCTGTCGTGGAGCCACCCTTGAAATACCGCCCTTTTGTTTTTT 2403 Query 79 GATTTCTAACCGGACGA--CGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGA 136 ||| |||||||| ||| ||| || ||| |||||| || | ||| ||||||| Sbjct 2404 GATATCTAACCG--CGATCCGT-TATCCGGATCCGGGACCCTGCATGGTGGGTAGTTTGA 2460 Query 137 CTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATG 196 |||||||||||||||||||||||||||||||||||| | ||| || |||| |||| | Sbjct 2461 CTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGAAGGTAGGCTCAAGCTGGACG 2520 Query 197 GAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTA 255 |||| || || || ||||||| |||| ||| || |||||| || ||| || ||| | Sbjct 2521 GAAATCA-GCTGACGAGTGCAATGGCATAAGCCTGCCTGACTGTGAGACCGACAGGTCGA 2579 Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGA 315 |||| |||||||||||| | || |||||||| ||| | | ||||| |||| |||||| | Sbjct 2580 GCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCGTGGAAGGGCCATCGCTCAA 2639 Query 316 CGGATAAAAGCTACCCTGGGGATA 339 |||||||||| ||| | ||||||| Sbjct 2640 CGGATAAAAGGTACGCCGGGGATA 2663 >seq4604 Length=8381 Score = 197 bits (218), Expect = 3e-48 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||||| | ||| ||||||||||||| |||||||||| ||| |||||||||||| Sbjct 6639 GACAGTGTGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTT 6698 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| |||||||||| || ||| || |||||| ||||||| ||| ||||||| | Sbjct 6699 TCAAAGGTACCCTCAGCATGTTTGGTAATCATGCGTGGAGTGCAATAGCATAAGGGTGCT 6758 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || || |||||| | |||| |||||||| || || |||||||| ||| | Sbjct 6759 TGACTGTGAGACTAACAAGTCGACCAGGAACGAAAGTTGGATATAGTGATCCGGTGGTTC 6818 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || |||||| |||| |||||| | ||||||||| ||| | ||||||| Sbjct 6819 TGTATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACTCCGGGGATA 6865 >seq6825 Length=2172 Score = 192 bits (212), Expect = 1e-46 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | | ||| ||||| ||||||||||| |||||||||| ||||||||||| Sbjct 655 GGGACAGTGCCTGGTGGGTAGTTTAACTGGGGCGGTTGCCTCCCAAAATGTAACGGAGGC 714 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 |||||||| | |||||||| ||| ||| || || | | |||| || ||| ||||| | Sbjct 715 GCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTTGAGTGTAAGTGCACAAGGGAG 774 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| || ||| || ||| ||||||||||||||||||| || ||||||||| Sbjct 775 CTTGACTGTGAGACCGACAGGTCGAGCAGGGACGAAAGTCGGGACTAGTGATCCGGCACC 834 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||||| || ||||||| ||||||||||| ||||| ||||||| Sbjct 835 ACCTGGTGGAAGGGGTGTCGCTCAACGGATAAAAGGTACCCCGGGGATA 883 >seq5238 Length=5540 Score = 179 bits (198), Expect = 7e-43 Identities = 168/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||||||||||||||||||||||||||||||||| | ||| || || Sbjct 1091 GGGTAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGAAGGTAGGCT 1032 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 || ||| ||||| || | ||||||| |||| ||| || ||||||||| | | Sbjct 1031 CAAGCTGGTCGGAAATCAGCTGTTGAGTGCAATGGCATAAGCCTGCCTGACTGCGAGAGC 972 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 || || ||||| |||||||||||| | || |||||||| ||| | | ||||| ||| Sbjct 971 GACAGTTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCGTGGAAGGGC 912 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| ||||||||||| ||| | ||||||| Sbjct 911 CATCGCTCAACGGATAAAAGGTACGCCGGGGATA 878 >seq4587 Length=8477 Score = 172 bits (190), Expect = 1e-40 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| ||||||||||||| |||||||||| ||| |||||||||||| Sbjct 5387 GGACATTGTGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCTAAAAAGTAACGGAGGCT 5446 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||||| |||||||||| ||| ||| || |||||| | || | | | | | ||||||| Sbjct 5447 CGCAAAGGTACCCTCAGCATGGTTGGTAATCATGCGTAGAGCGTATAAGTACAAGGGTGC 5506 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAA-TGATCCGGCGGT 290 ||||||| || | | || | |||| |||||| | ||||||| |||||||| ||| Sbjct 5507 TTGACTGAGAGAGGGACGCCTCGAACAGGTGCGAAAG-CAGGCTTAAGTGATCCGGTGGT 5565 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | |||||| |||| |||||| | ||||||||| ||| | ||||||| Sbjct 5566 TCCGCATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACTCCGGGGATA 5614 >seq247 Length=422015 Score = 172 bits (190), Expect = 1e-40 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| ||||||||||||| |||||||||| ||| |||||||||||| Sbjct 1017 GGACATTGTGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCTAAAAAGTAACGGAGGCT 958 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||||| |||||||||| ||| ||| || |||||| | || | | | | | ||||||| Sbjct 957 CGCAAAGGTACCCTCAGCATGGTTGGTAATCATGCGTAGAGCGTATAAGTACAAGGGTGC 898 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAA-TGATCCGGCGGT 290 ||||||| || | | || | |||| |||||| | ||||||| |||||||| ||| Sbjct 897 TTGACTGAGAGAGGGACGCCTCGAACAGGTGCGAAAG-CAGGCTTAAGTGATCCGGTGGT 839 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | |||||| |||| |||||| | ||||||||| ||| | ||||||| Sbjct 838 TCCGCATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACTCCGGGGATA 790 >seq4107 Length=10989 Score = 161 bits (178), Expect = 2e-37 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGA-CTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | || ||||||| ||||||||||| |||||||| | |||||||||| Sbjct 6317 GGACAGTGTATGGTGGT-AGTTTGAGCTGGGGCGGTCTCCTCCCAA-GCGTAACGGAGGA 6260 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 || | ||| ||| || || ||| |||| | || || ||||||| |||||||| ||| Sbjct 6259 GCACGAAGGTACACTAAGTATGGTCGGAATC-ATACGGTTAGTGCAATGGCAAAAGTGTG 6201 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||||| || || || |||||| ||||| || || | || ||||||| ||| Sbjct 6200 CTTGACTGCGAGACAGACACGTGGAGCAGGTACGAA-GTAGGTCATAGTGATCCGT-GGT 6143 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 6142 TCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 6094 >seq3429 Length=16784 Score = 150 bits (166), Expect = 4e-34 Identities = 167/214 (78%), Gaps = 9/214 (4%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCG-GGCAGTTTGACTGGGGC--GGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||||| || | || |||||||||||||| |||||||| ||||| ||||| ||||| Sbjct 5464 GACAGTGT--GTGGTGGTAGTTTGACTGGGGCGTGGTCGCCT-CCAAAAAGTAA-GGAGG 5409 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | ||||| |||||||||| || ||| || |||||| || |||| ||| |||||| Sbjct 5408 CTTTCAAAGGTACCCTCAGCATGTTTGGTAATCATGCGGTGAG-GCAATAGCATAAGGGT 5350 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||| || || |||||| | |||| |||||||| || || |||||||| || Sbjct 5349 GCTTGACTGTGAGACTAACAAGTCGACCAGGAACGAAAGTTGGATATAGTGATCCGGTGG 5290 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 | ||| |||||| |||| |||||| | ||||||| Sbjct 5289 TTCTGTATGGAAGGGCCATCGCTC-AAGGATAAA 5257 >seq34 Length=764898 Score = 93.3 bits (102), Expect = 8e-17 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 197 GAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAG 256 |||||| || | |||| ||||||| |||| | ||||||| || | | |||||| | Sbjct 683468 GAAACCGATCGAAGAGTGTAAAGGCATAAGGAAGCTTGACTGTGAGAACTACAAGTCGAA 683409 Query 257 CAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGAC 316 ||| |||||||||||| || | ||||| |||| | ||| ||||| | |||| ||| || Sbjct 683408 CAGAGACGAAAGTCGGTCTCAGTGATCTGGCGATATTGAGTGGAAAAGTCGTCACTCAAC 683349 Query 317 GGATAAAAGCTACCCT 332 ||| ||||| ||| || Sbjct 683348 GGACAAAAGTTACTCT 683333 >seq5390 Length=3170 Score = 86.0 bits (94), Expect = 1e-14 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCC 184 |||| |||||||||||||||||||||||| |||||||||||||||||| | | | | | Sbjct 101 CGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCGATGGTGGGC 42 Query 185 TCAGCTTGGATGGAAACCATGCG-CACAGTGCAAAGGCA 222 |||| || |||||||| | | | ||||||| |||| Sbjct 41 TCAGGACGGTTGGAAACCGTCTGTTAGAGTGCAATGGCA 3 >seq2601 Length=37044 Score = 84.2 bits (92), Expect = 4e-14 Identities = 167/248 (67%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 111 GGGACAGTGTC-AGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||| ||| ||| || ||||| ||||||||||| |||||| ||| ||||||||||| Sbjct 36386 GGGACATTGTATAGT-GGATAGTTTTACTGGGGCGGTAGCCTCCTAAAAAGTAACGGAGG 36328 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 || |||||||| ||| || || |||| || | | ||| || || | ||| | Sbjct 36327 CGTGCAAAGATAAGTTCAAACTGTATAGAAATCAGTTGTAGAGTATAATGGTATAAGCTT 36268 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACG------------------AAAGTCG 271 | |||||| | || |||||| ||||| | | || || | Sbjct 36267 ATCTGACTGTGTGACTTACAAGTCAAGCAGAAATGTTATATTTATAATAATATAATGTTG 36208 Query 272 GGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCC 331 | | || |||||||| | | ||| |||||| || | ||||| ||||||||||| ||| | Sbjct 36207 GTCATAGTGATCCGGTGATTCTGTATGGAAAGGTCATCGCT-AACGGATAAAAGGTACGC 36149 Query 332 TGGGGATA 339 |||||| Sbjct 36148 CAGGGATA 36141 >seq155 Length=507814 Score = 78.8 bits (86), Expect = 2e-12 Identities = 91/123 (74%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCA 209 |||| ||| |||||||||||| ||||| | |||||| | || |||| | || | Sbjct 75713 CTCCTAAAAGGTAACGGAGGCGTACAAAGGTTTCCTCAGATCGGTCAGAAATCGATCGAA 75772 Query 210 CAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGT 269 |||| |||| || |||| | ||||||| || ||| |||||| | ||| ||||||||| Sbjct 75773 GAGTGTAAAGACATAAGGAAGCTTGACTGTGAGACCTACAAGTCAAACAGAGACGAAAGT 75832 Query 270 CGG 272 ||| Sbjct 75833 CGG 75835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982269075552