Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2843 93.3 5e-17 seq4075 89.7 6e-16 seq4457 84.2 3e-14 seq4286 73.4 5e-11 >seq2843 Length=29081 Score = 93.3 bits (102), Expect = 5e-17 Identities = 83/101 (82%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCAC-GTCCTATTCTATTATTCCATGCTAATGTATTCGGGC 68 |||||||||| || || || ||||||| |||||||||||||||| |||||| ||| Sbjct 4915 AAACCAACAACATC---ACAGACAGTCCTATGTTATTATTCCATGCTAAGGTATTCAGGC 4971 Query 69 GTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||||||| ||| ||||||| Sbjct 4972 -TAGGCCTGCTTGGAACACTCTAATTTTTTCACAGTAAAAG 5011 Score = 93.3 bits (102), Expect = 5e-17 Identities = 84/103 (82%), Gaps = 7/103 (7%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGT---CCTATTCTATTATTCCATGCTAATGTATTCG- 65 ||||||||||||||| || ||| ||||| |||||||||||||||||||| | Sbjct 17395 AAACCAACAAAATAG--ACCGTCGTGGCCCTATCTCATTATTCCATGCTAATGTATCCAA 17452 Query 66 -GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||| ||||||||||||||||||||||||||| ||| ||||| Sbjct 17453 CGGCCTAAGCCTGCTTTGAACACTCTAATTTTTTCACAGTAAA 17495 Score = 82.4 bits (90), Expect = 9e-14 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 9 GAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-G 67 ||||||||| |||||| || | |||||| | |||| |||||||||||||| | | | Sbjct 19180 GAAACCAACGTAATAGGACCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAG 19238 Query 68 CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 |||| || |||||||| ||||||||||| |||| |||| || Sbjct 19239 CGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 19280 Score = 73.4 bits (80), Expect = 5e-11 Identities = 76/97 (78%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 ||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 18725 CCAACGTAATAGGACCGAAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 18783 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 || |||||||| ||||||||||| |||| | |||| Sbjct 18784 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGCAAAA 18820 >seq4075 Length=11175 Score = 89.7 bits (98), Expect = 6e-16 Identities = 86/107 (80%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG-GGC 68 ||||||||||||||| || | |||||| ||||||||||||||||||||| ||| Sbjct 2299 AAACCAACAAAATAGA-ACCAAAGTCCTAAGTGGTTATTCCATGCTAATGTATTCAAGGC 2241 Query 69 G--TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCT 113 | || ||||||||| ||||||||||||| |||| |||| ||||| Sbjct 2240 GAGTATGCCTGCTTTAAACACTCTAATTTGTTCAAAGTAATTGTCCT 2194 >seq4457 Length=11085 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||||| | ||||| Sbjct 5768 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATTCAGAGCGTA 5710 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 5709 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 5672 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 10068 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 10126 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 10127 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 10167 >seq4286 Length=9999 Score = 73.4 bits (80), Expect = 5e-11 Identities = 80/104 (77%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 4 CTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATT 63 ||| ||||||||||||| |||| | ||||||||| ||||||||||||| |||| Sbjct 3754 CTCAAGAAACCAACAAA-TAGGTCA--AAGTCCTATTCCATTATTCCATGCTGCAGTATC 3698 Query 64 CGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | || |||||| | |||||||||||||| |||| ||||| Sbjct 3697 CAAGCAATTGCCTGCCTGAAACACTCTAATTTTTTCAAAGTAAA 3654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595123156518