Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq3950 176 4e-42 seq4107 165 7e-39 seq3561 161 8e-38 seq7606 158 1e-36 seq7140 138 9e-31 seq6341 134 1e-29 seq4604 122 7e-26 seq4587 118 9e-25 seq247 109 5e-22 seq2601 100 2e-19 seq4709 98.7 8e-19 seq3245 95.1 1e-17 seq3429 80.6 2e-13 >seq3950 Length=12057 Score = 176 bits (194), Expect = 4e-42 Identities = 140/163 (86%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||||| ||||||| ||| || ||| ||| |||| || ||||| |||||| Sbjct 9751 TCGAGTTGCAGACTCCAATCCGAACTGAGA-ACAGTTTTATGGGGTTGGCTCCACCTCGC 9809 Query 60 GGGTTGGCGGCCCTCTGTA-TGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGC 118 || || ||| ||||||||| ||| |||||||| |||||||||||||| || ||||||| Sbjct 9810 GGCTTAGCGACCCTCTGTACTGT-CCATTGTAGCACGTGTGAAGCCCTGGCCGTAAGGGC 9868 Query 119 CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 9869 CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGCTTGACAC 9911 >seq4107 Length=10989 Score = 165 bits (182), Expect = 7e-39 Identities = 138/164 (84%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||| |||| |||||||||| | | |||||| Sbjct 9553 TCGAGTTGCAGACTCCGATCCGGACTACGACTAGCTTTATGGGATTAGCGCACTCTCGCG 9612 Query 61 GGTTGGCGGCCCTCTGTATGTA-CCATTGTATG-ACGTGTGAAGCCCTACCCATAAGGGC 118 |||||| |||| |||| || |||||||||| ||||||| ||| | |||||||||| Sbjct 9613 AGTTGGCAACCCTTTGTAGCTAGCCATTGTATGCACGTGTGTAGCGCCTGCCATAAGGGC 9672 Query 119 CATGA-GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||| | ||||||||||||||||| |||||||||||||||||| Sbjct 9673 CATGATGAACTTGACGTCATCCCCA-CTTCCTCCGGTTTGTCAC 9715 >seq3561 Length=15242 Score = 161 bits (178), Expect = 8e-38 Identities = 133/161 (83%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||| | ||| ||||||| |||||| |||| Sbjct 2806 TCGAGTTGCAGACTCCGATCCGGACTACGACAAGTTTTGTGGGATTCGCTCCCA-TCGCT 2864 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 |||| || |||||||||| | |||||||| ||||||| ||||| | ||||||||| Sbjct 2865 GGTTTGCAGCCCTCTGTACTTGCCATTGTAGCACGTGTGTAGCCCAGGTCGTAAGGGCCA 2924 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||| |||||||||||| ||||||||||| Sbjct 2925 TGATGACTTGACGTCGTCCCCACCTTCCCTCGGTTTGTCAC 2965 >seq7606 Length=1506 Score = 158 bits (174), Expect = 1e-36 Identities = 131/160 (82%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| || |||| ||| |||||||| Sbjct 1199 CGAGTTGCAGCCTGCAATCCGAACTGAGGTACGTTTTTTGAGATTTGCTTACCCTCGCGA 1258 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 ||| || ||||||||| | ||||||||| ||||||| |||||| ||||| |||||| Sbjct 1259 GTTCGCTTCCCTCTGTACGCACCATTGTAGCACGTGTGCAGCCCTGGACATAAAGGCCAT 1318 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||| ||||||||||||||||||||| ||| Sbjct 1319 GATGACTTGACGTCGTCCCCACCTTCCTCCGGTTTGACAC 1358 >seq7140 Length=1853 Score = 138 bits (152), Expect = 9e-31 Identities = 129/162 (80%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGG-ATTAGCTCCCCCTCGC 59 |||||||||||| ||||||||| ||| || || ||| |||| ||||||||| |||| Sbjct 1626 TCGAGTTGCAGAGTACAATCCGAACT--GAGACGGTTTTTGGGGATTAGCTCCAGGTCGC 1569 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 || || |||| ||| |||||||| ||||||| ||||| ||| |||||||| Sbjct 1568 CCCTTCGCTGCCCATTGTCACCGCCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCC 1509 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||| ||||||||| | ||||||| Sbjct 1508 ATGAGGACTTGACGTCATCCCCGCCTTCCTCCCGCTTGTCAC 1467 >seq6341 Length=2919 Score = 134 bits (148), Expect = 1e-29 Identities = 121/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| | ||||| ||| || |||| |||||| ||||| |||| || Sbjct 1082 TCGAGTTGCAGACCCCGATCCGAACTGAGACCAGCTTTAAGGGATTCGCTCCACCTCACG 1023 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||||||||| |||||||| | |||||||||||| |||||||| || Sbjct 1022 GTCTCGCAGCCCTCTGTACTGGCCATTGTAGCATGTGTGAAGCCCTGGACATAAGGGGCA 963 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| |||||||||||||||||||||||||||| Sbjct 962 TGATGACTTGACGTCATCCCCACCTTCCTCCG 931 >seq4604 Length=8381 Score = 122 bits (134), Expect = 7e-26 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| || | ||||| || |||| || | | | | Sbjct 2540 TCGAGTTGCAGACCCCAATCCGAACTGAGAGAGACTTTTTGAGATTGGCATCACGTTACC 2481 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||||||||| | |||||||| ||||||| |||||| | ||||||||| Sbjct 2480 GTGTAGCTACCCTCTGTATCTCCCATTGTAGCACGTGTGTAGCCCTGGGCGTAAGGGCCA 2421 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||| ||||||||||||||||| |||||||| Sbjct 2420 TGATGACTTGACGTCATCCCCTCCTTCCTC 2391 >seq4587 Length=8477 Score = 118 bits (130), Expect = 9e-25 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||| |||||| ||||||| ||| || ||||||||||| ||| ||||||| Sbjct 2237 TCGAGTTCCAGACTCCAATCCGAACTGGGACCAGATTTCTGGGATTGGCTAAACCTCGCG 2178 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||||||| |||||||| ||||||| |||||| ||||| ||||| Sbjct 2177 GTCTCGCTACCCTCTGTTCTGGCCATTGTAGCACGTGTGTAGCCCTGGGCATAAAGGCCA 2118 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||| || |||||||| |||||||||||||| Sbjct 2117 TGATGATTTGACGTCGTCCCCACCTTCCTC 2088 >seq247 Length=422015 Score = 109 bits (120), Expect = 5e-22 Identities = 123/157 (78%), Gaps = 7/157 (4%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGC--TCCCCCTCG 58 |||||||||||||||||||||| ||| || |||||| || |||| || || | ||| Sbjct 4219 TCGAGTTGCAGACTACAATCCGAACTGAGACGCACTTTTTGAGATTCGCTTTCACTTTCG 4278 Query 59 C-GGGTTGGCGGCCCTCTGT-ATGTACCATT-GTATGACGTGTGAAGCCCTACCCATAAG 115 | | || | | |||||||| ||| ||||| ||| ||||||| |||||| | |||| Sbjct 4279 CAGTGTCGACTACCCTCTGTAATGCGCCATTGGTAGCACGTGTGTAGCCCTGGGCGTAAG 4338 Query 116 GGCCAT-GAGGACTTGACGTCATCCCCAC-CTTCCTC 150 |||||| || ||||||||||||||||| | ||||||| Sbjct 4339 GGCCATCGATGACTTGACGTCATCCCCGCGCTTCCTC 4375 >seq2601 Length=37044 Score = 100 bits (110), Expect = 2e-19 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||||| |||| ||| ||||| |||| ||||| || || Sbjct 5788 TCGAGTTGCAGAGAACAATCCGAACTAAGATT-ACTTTTAAAGATTTGCTCCAACTTACG 5846 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || || | ||| ||||||||| ||||||| ||||| | |||| ||||||| Sbjct 5847 TTTTTGCTTCTTATTGTCATAACCATTGTAGCACGTGTGTAGCCCAATCCATCAGGGCCA 5906 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||| ||||||||||||||| | |||||||| Sbjct 5907 TGAAGACTTGACGTCATCCTCGCCTTCCTC 5936 >seq4709 Length=7877 Score = 98.7 bits (108), Expect = 8e-19 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 71 CCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTG 130 ||||||| | |||| ||| ||||||| ||||| ||| ||||||||||||||||||| Sbjct 5170 CCTCTGTCATTGCCAT-GTAGCACGTGTGTAGCCCAGCCCGTAAGGGCCATGAGGACTTG 5112 Query 131 ACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||| ||||||||||| ||||||| Sbjct 5111 ACGTCATCCCC-CCTTCCTCCGGCTTGTCAC 5082 >seq3245 Length=19255 Score = 95.1 bits (104), Expect = 1e-17 Identities = 116/148 (78%), Gaps = 9/148 (6%) Strand=Plus/Plus Query 18 ATCCGGACTACGATACACTTTCTGGGA--TTAGCTCCCCCTCGCGGGTTGGCGGCCCTCT 75 ||||||||||||| | ||| || || || ||||||| |||||| ||| | ||||||| Sbjct 7691 ATCCGGACTACGACGCGTTTTGTGTGAGATTGGCTCCCC-TCGCGGTTTG-CAGCCCTCT 7748 Query 76 GTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAG-GACTTGACGT 134 || ||| ||| ||||||| |||||| || ||||||| |||| ||| |||||| Sbjct 7749 GTGGCGCGCAT-GTAGCACGTGTGTAGCCCTGGCCGTAAGGGC-ATGAATGACCTGACGT 7806 Query 135 CATCCCCACCTTCCTC-CGGTTTGTCAC 161 ||| |||||||||||| ||||||||||| Sbjct 7807 CAT-CCCACCTTCCTCGCGGTTTGTCAC 7833 >seq3429 Length=16784 Score = 80.6 bits (88), Expect = 2e-13 Identities = 118/157 (75%), Gaps = 10/157 (6%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACT-ACGATA-CACTTTCTGGG--ATTAGC--TCCCC 54 ||||||||||||| ||||||| ||| | || | |||||| ||| ||| | || | Sbjct 8515 TCGAGTTGCAGACC-CAATCCGAACTGAGGAGAGCACTTTTTGGAGAATTGGGCATCACG 8573 Query 55 CTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAA 114 | || | | || ||||| |||| | |||||||| ||||||| |||||| | ||| Sbjct 8574 TTAGCCGTGTAGCTACCCTCGGTATCT-CCATTGTAGCACGTGTGTAGCCCTGGGCGTAA 8632 Query 115 GGGCCATGAGGACTTGA-CGTCATCCCCACCTTCCTC 150 || |||||| ||||||| |||||||||| |||||||| Sbjct 8633 GG-CCATGATGACTTGAACGTCATCCCCTCCTTCCTC 8668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415946292190