Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3561 226 5e-57 seq7140 223 6e-56 seq5912 206 4e-51 seq4587 187 4e-45 seq9799 158 2e-36 seq4107 156 7e-36 seq6906 131 3e-28 seq359 120 5e-25 seq3429 118 2e-24 seq5166 113 7e-23 seq2601 93.3 7e-17 seq2288 77.0 5e-12 >seq3561 Length=15242 Score = 226 bits (250), Expect = 5e-57 Identities = 224/290 (77%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| |||| | ||||||||||||||||| | Sbjct 3361 CCCACGCTTTCGCACCTCAGCGTCAGTATTAAGCCAGGAGGCCGCCTTCGCCACTGGTAT 3420 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||||||||||||||||||||||| ||||||| | |||||| || Sbjct 3421 TCCTCCACATATCTACGCATTTCACCGCTACACATGGAATTCTACCTCCCTCTCTTATAC 3480 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || |||| || | |||| |||||||||| | ||||||||| |||| Sbjct 3481 TCTAGTTGGCCAGTATCGAGTGCAATTCCCAGGTTGAGCCCGGGGCTTTCACATCCGACT 3540 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| ||| |||||| |||| ||| |||| |||||||||| ||| || Sbjct 3541 TAACAAACCGCCTACGCGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG 3600 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||| ||| ||||| Sbjct 3601 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTAAAGGTA 3650 >seq7140 Length=1853 Score = 223 bits (246), Expect = 6e-56 Identities = 220/283 (78%), Gaps = 1/283 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | | |||| | |||||||||||||||||| Sbjct 1075 CCCACGCTTTCGCACCTCAGCGTCAGTACCGGACCAGTGAATCGCCTTCGCCACTGGTGT 1016 Query 61 TCCTCCGTA-TATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 || || || |||||||| |||||||| |||||| ||| |||| | ||||| | | | Sbjct 1015 TCTTCACTAATATCTACGAATTTCACCTCTACACTAGGAGTTCCATTCACCTCTTCCGGA 956 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 ||| ||| ||||| ||||| |||| ||||||||||| | |||||| ||||| Sbjct 955 CTCTAGACTGACAGTATCAAAGGCAGTTCCGGGGTTGAGCCCCGGGATTTCACCCCTGAC 896 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 | | |||||||| ||| |||||| |||| ||| |||| | |||||| || ||| | Sbjct 895 TGATCAGTCCGCCTACGCGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCTCCCTTC 836 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||||||||||| ||||||||| |||| ||| Sbjct 835 GTATTACCGCGGCTGCTGGCACGAAGTTAGCCGGAGCTTCTTC 793 >seq5912 Length=3706 Score = 206 bits (228), Expect = 4e-51 Identities = 209/272 (77%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||| |||||| | ||||| | ||||||||||||| ||| | Sbjct 47 CCCACGCTTTCGCACCTCAGTGTCAGTATCAATCCAGGAGGCCGCCTTCGCCACCGGTAT 106 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||| | ||||||||||||||||||||||||| | |||||| | ||||| | || Sbjct 107 TCCTCAGAATATCTACGCATTTCACCGCTACACTCTGAATTCTACCTCCCTCTATCGTAC 166 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | |||||| |||||| ||||||||||| | ||||||||| ||| Sbjct 167 TCTAGTTCATCAGTTTGGAATGCAATTCCCAGGTTGAGCCCAGGGCTTTCACATCCCACT 226 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | || ||||| || |||||| |||| ||| |||| ||||| ||| ||| || Sbjct 227 TAACAAACCACCTACGTGCGCTTTACGCCCAGTAATTCCGATTAACGTTTGTACCCTCCG 286 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCG 272 |||||||||||||||||||||| ||||||||| Sbjct 287 TATTACCGCGGCTGCTGGCACGGAGTTAGCCG 318 >seq4587 Length=8477 Score = 187 bits (206), Expect = 4e-45 Identities = 213/285 (75%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||| ||| ||| || | | |||||||| | |||||| Sbjct 1692 CCCACGCTTTCGTGCCTCAGCGTCAATTAAGGTCTAGTCAGCTGCCTTCGCAATTGGTGT 1633 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACA---CACGGAATTCCGATTGCCTCTCCAG 117 || ||||||| |||||||||||||||| ||| |||||| |||| | Sbjct 1632 TCTATGACATATCTAAGCATTTCACCGCTACATGTCAC---ATTCCGCCGACCTCAACCT 1576 Query 118 CACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 | ||||| | ||||| ||||| |||| | ||| ||| |||||| |||| Sbjct 1575 AATTCAAGCACTACAGTATCAAAGGCAGTCCCACAGTTAAGCTGTGGCCTTTCACCTCTG 1516 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 |||| |||||||| | ||||||| ||||| | | |||||||||||||||| ||| Sbjct 1515 ACTTATAGCGCCGCCTACGCACCCTTTAAACCCAGTGATTCCGGATAACGCTTGCACCCT 1456 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1455 CCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 1411 >seq9799 Length=801 Score = 158 bits (174), Expect = 2e-36 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69 ATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAA 128 ||||||||| |||||||| |||||| ||| ||||| | |||||| | |||| ||| Sbjct 801 ATATCTACGAATTTCACCTCTACACTCGGTATTCCACTCACCTCTCTCGAACTCCAGACT 742 Query 129 AACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCC 188 | ||||| || |||| |||||||||| | |||||| | |||| || | Sbjct 741 GATAGTTTTGAAGGCAGTTCCGAGGTTGAGCCCCGGGATTTCACCCCCAACTTTCCAGTC 682 Query 189 CGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCG 248 ||||||| || |||||| |||| ||| |||| | |||||| ||| ||| |||||||||| Sbjct 681 CGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCCCCCTCCGTATTACCG 622 Query 249 CGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||| ||||||||| ||||| ||| | |||| Sbjct 621 CGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCTGCTGGTA 580 >seq4107 Length=10989 Score = 156 bits (172), Expect = 7e-36 Identities = 213/291 (73%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 5 CGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGC-CACTGGTGTTCC 63 ||||||||| ||||||||||||| | | | || | ||||||||| ||||| |||||| Sbjct 10111 CGCTTTCGCACCTCAGCGTCAGTAATGGCCAAGTGAGTCGCCTTCGCGCACTGATGTTCC 10170 Query 64 TCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGC-CTCTCCAGCACTC 122 | | || |||||||||||||||||||||| | |||||| | | |||| | ||||| Sbjct 10171 TTCAGATCTCTACGCATTTCACCGCTACACCTGAAATTCCACTCACACTCTACCACACTC 10230 Query 123 AAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCT--GACT 180 || |||| | ||||||| | | |||||||||| | || |||||| ||| Sbjct 10231 TAGCCTGCCAGTCTTAAATGCATTCCA--GGTTGAGCCCGGGGATTCAACATCTAAAACT 10288 Query 181 ---TGC-----CTTCCCGCCT-ACACGCCCTTTACACCCAATAAATCCGGATAACGCTTG 231 || | | |||| || ||| |||||| |||| ||| |||| ||||||| | Sbjct 10289 AAAGGCGGAAACAAACGGCCTAACGCGCGCTTTACGCCCAGTAATTCCGATTAACGCTCG 10348 Query 232 CCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 | ||| |||||||||||||||||||||||| ||||||||| |||| ||| Sbjct 10349 CACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTC 10399 >seq6906 Length=2093 Score = 131 bits (144), Expect = 3e-28 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42 CCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAA-T 100 |||| ||||| |||||||||||| | ||||| || |||||||||||| ||| ||||| | Sbjct 1629 CCGCTTTCGCTACTGGTGTTCCTTCCGATATCAACACATTTCACCGCTCCAC-CGGAAGT 1571 Query 101 TCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCC 160 |||| || || ||||||| | |||||| | |||| ||||||||| Sbjct 1570 TCCGCACACCCCTATCTTACTCAAGCCATCCAGTTTAGAGCGCAGTTCCCCGGTTGAGCC 1511 Query 161 CATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCG 220 | ||||||| | |||| | |||||||| | ||||||| |||| | | |||| Sbjct 1510 GGGGGATTTCACACCCTACTTAAATGACCGCCTACGCACCCTTTAAGCCCAGTGATTCCG 1451 Query 221 GATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCC 271 |||||| | || |||||||||||||||||||||||||||| |||||| Sbjct 1450 AATAACGTTCGCACAGTACGTATTACCGCGGCTGCTGGCACGTACTTAGCC 1400 >seq359 Length=352878 Score = 120 bits (132), Expect = 5e-25 Identities = 214/296 (72%), Gaps = 21/296 (7%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCG-CCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTG-GT 58 ||||||||||||| ||||||||||||| | | |||| | ||||||||||||| | || Sbjct 38896 CCCACGCTTTCGCAACCTCAGCGTCAGTAATCGACCAGGTAGCCGCCTTCGCCACCGCGT 38955 Query 59 GTTCCTCCGTATATCTAC--GCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC-C 115 |||| ||| |||||||| | |||||||| |||| |||||||| | ||||| | Sbjct 38956 GTTCTTCCAAATATCTACATGAATTTCACCTCTACTT--GGAATTCCACTACCCTCTTTC 39013 Query 116 AGCACTCAAGAAAAACAGTTTCAAATGCAGG-CTAT----GGGTTGAGCCCATAGT-TTT 169 | ||||||| | | |||| | ||| ||| | || |||| || || | ||| Sbjct 39014 CGAACTCAAGCATACCAGTATTCAAT--AGGTCAATTCCGGGGTGCAGGCCCGGGCCTTT 39071 Query 170 CACATCTGACTTGCCTTCCCGCCTACAC-GCCCTTTACACCCAATAAATCCGGATAACGC 228 ||| |||||| | |||||||| || |||| || || |||||| | ||||||| Sbjct 39072 CACC-CTGACTAGATACGCCGCCTACCGTGCGCTTTT-ACGCAGTAAATC-GAATAACGC 39128 Query 229 TTGCCACCTACGTATTACCGCGGCTGC--TGGCACGTAGTTAGCCGTGGCTTATTC 282 | ||| || ||||||||||||||||| ||||||| |||| || ||||| ||| Sbjct 39129 TAGCCCGCTCCGTATTACCGCGGCTGCTTTGGCACGGAGTTTAGCGGGGCTTCTTC 39184 >seq3429 Length=16784 Score = 118 bits (130), Expect = 2e-24 Identities = 213/293 (73%), Gaps = 15/293 (5%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAG-CGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTG 59 |||||||||||| ||||||| ||||| || |||||| || | |||| ||| | |||| Sbjct 9064 CCCACGCTTTCGTGCCTCAGGCGTCAATTCAAGTCCAGTAAGCTGCCTACGCAATCGGTG 9123 Query 60 TTCCTCCGTATATCTACGCA-TTTCACCGCTACACACGGAATTCCGAT-TGCCTCTCCAG 117 ||| | |||||| ||| |||||| | |||| ||||||| | |||| | | Sbjct 9124 TTCTTGATGGTATCTATGCAATTTCACGACG-CACATC-AATTCCGGCCTACCTCAACTG 9181 Query 118 CACTCAAGAAAAACAGTTTCAAATG--CAGGCTATGGGTTGAGCCCATAGT-TTTCACAT 174 | || | |||| | ||||| || | || | |||| | || | |||||| Sbjct 9182 AATTCTAAGGTCCCAGTAT-AAATGGGCATTCCATAG-TTGAAGCTATGGGCTTTCACCA 9239 Query 175 CTGACTTGCCTTCCCGCC-TACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCC 233 ||||||| |||||| ||| | ||||||| |||||||||||||||| || |||||| Sbjct 9240 CTGACTTAAAGACCCGCCCTACGCACCCTTTAAACCCAATAAATCCGGACAA-GCTTGCA 9298 Query 234 ACCTAC-GTATTACCGCGGCT-GCTGGCACGTAGTTAGCCGTGGCTTATTCCT 284 ||| | |||||| ||||||| ||||||||| |||||||||| |||||||||| Sbjct 9299 CCCTCCGGTATTA-CGCGGCTGGCTGGCACGGAGTTAGCCGTTGCTTATTCCT 9350 >seq5166 Length=5470 Score = 113 bits (124), Expect = 7e-23 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | ||||| || |||||| | |||||| ||| Sbjct 15 GGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTACAGACGCTTTACGCCC 74 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| |||| |||||||||||||||||||||| ||||||| Sbjct 75 AATCATTCCGGATAACGCTTGCAACCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAGC 134 Query 271 CGTGGCTTATTC 282 || |||||||| Sbjct 135 CGGTGCTTATTC 146 >seq2601 Length=37044 Score = 93.3 bits (102), Expect = 7e-17 Identities = 187/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||| ||||||||||||| ||||| | ||||||||| |||| || Sbjct 6347 CCCATCCTTTCGTACCTCAGCGTCAGTGTTAATCCAGATAATCGCCTTCGCTTCTGGAGT 6406 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||| |||| | |||||| |||||| | ||||| || Sbjct 6407 TCCTTTTAATATTTACAAATTTTATTTCTACACTAAAAATTCCATTATCCTCTATTAAAC 6466 Query 121 TCAAGAAAAACAGT--TTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 ||||| || ||| || |||| | || | || ||| | |||||| | | Sbjct 6467 TCAAGTTTAAAAGTATTTTAAATA-ATTTTAAAG-TTAAGCTTTAAACTTTCACCTAAAA 6524 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| ||||||||| |||||||| |||| | | |||| ||||| || | ||| Sbjct 6525 CTTAATAAACCGCCTACATACCCTTTACGCCCAGTTATTCCGAATAACACTAGTTCCCTC 6584 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCG 272 ||| |||||||||||||||||||| ||||||||| Sbjct 6585 CGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCG 6618 >seq2288 Length=51584 Score = 77.0 bits (84), Expect = 5e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 ||||| | |||||||| |||||| | | || ||||| |||| || |||||||||||| Sbjct 36877 CCTACGCACCCTTTACGCCCAATCAGTACGAATAACACTTGTTCCCCTCGTATTACCGCG 36818 Query 251 GCTGCTGGCACGTAGTTAGCCG 272 ||||||||||| |||||| || Sbjct 36817 ACTGCTGGCACGAAGTTAGTCG 36796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828692997517