Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq4107 152 4e-35 seq5238 132 3e-29 seq5349 120 2e-25 seq4604 118 7e-25 seq3950 105 5e-21 seq4587 104 2e-20 seq247 104 2e-20 seq3429 102 6e-20 seq4790 91.5 1e-16 >seq4107 Length=10989 Score = 152 bits (168), Expect = 4e-35 Identities = 120/140 (86%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| Sbjct 6105 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCA-CGGATCACTATGACCTA 6163 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 | |||| | |||||| | ||| ||||||| |||||||||||||||||||||||||| Sbjct 6164 C-TTCGTACCTGCTCCACGTGTCTGTCTCGCAGTCAAGCACACTTTTGCCATTGCACTAA 6222 Query 121 CACTACGATTTCCGACCGTA 140 | || || |||||||| || Sbjct 6223 CCGTATGA-TTCCGACCATA 6241 >seq5238 Length=5540 Score = 132 bits (146), Expect = 3e-29 Identities = 115/139 (83%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 889 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 948 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| | ||| ||||||||| ||| ||| ||| |||||||||||| | Sbjct 949 CTTTCGTCTCTGCTCGAACTGTCGCTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCA 1008 Query 120 TCA-CTACGATTTCCGACC 137 || || ||||||||||| Sbjct 1009 ACAGCT--GATTTCCGACC 1025 >seq5349 Length=5186 Score = 120 bits (132), Expect = 2e-25 Identities = 112/139 (81%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 2652 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGA 2593 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||||||| | ||| | |||| || ||| ||| ||| |||||||||||| Sbjct 2592 CTTTCGTCTCTGCTCGACCTGTCGGTCTCACAGTCAGGCAGGCTTATGCCATTGCACTCG 2533 Query 120 TCA-CTACGATTTCCGACC 137 ||| || |||||||| || Sbjct 2532 TCAGCT--GATTTCCGTCC 2516 >seq4604 Length=8381 Score = 118 bits (130), Expect = 7e-25 Identities = 97/118 (82%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| || | ||||||||||||||| || Sbjct 6854 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATATCCAA 6795 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| ||| || | ||||| |||| || |||||||| ||| ||| |||||||| Sbjct 6794 CTTTCGTTCCTGGTCGACTTGTTAGTCTCACAGTCAAGCACCCTTATGCTATTGCACT 6737 >seq3950 Length=12057 Score = 105 bits (116), Expect = 5e-21 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 6508 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTAAAGCCTA 6567 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| | |||||| | || | ||||||| |||||| | ||| ||| ||||||| Sbjct 6568 CTTTCGTACCTGCTCGACCCGTCGGTCTCGCAGTCAAGCTCCCTTATGCTTTTGCACT 6625 >seq4587 Length=8477 Score = 104 bits (114), Expect = 2e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | ||||||||||||| |||| Sbjct 5603 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTTAAGCCTG 5544 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTT 105 |||||||| ||| || || || ||||| || |||||||| ||| Sbjct 5543 CTTTCGCACCTGTTCGAGGCGTCCCTCTCTCAGTCAAGCACCCTT 5499 >seq247 Length=422015 Score = 104 bits (114), Expect = 2e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | ||||||||||||| |||| Sbjct 801 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTTAAGCCTG 860 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTT 105 |||||||| ||| || || || ||||| || |||||||| ||| Sbjct 861 CTTTCGCACCTGTTCGAGGCGTCCCTCTCTCAGTCAAGCACCCTT 905 >seq3429 Length=16784 Score = 102 bits (112), Expect = 6e-20 Identities = 93/115 (81%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||| |||| |||||||||||||||||||| || | ||||||||||||||| || Sbjct 5253 TACCTTT-ATCC-TTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATATCCAA 5310 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGC 115 |||||| ||| || | ||||| |||| || |||||||| ||| ||| ||||| Sbjct 5311 CTTTCGTTCCTGGTCGACTTGTTAGTCTCACAGTCAAGCACCCTTATGCTATTGC 5365 >seq4790 Length=7436 Score = 91.5 bits (100), Expect = 1e-16 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||| ||||||||| ||||||||||||| | || ||||||||||| | || Sbjct 5872 TACCTTTTATCTGTTGAGCGACGGCCCTTCCATTCGGAACCGCCGGATCACTAAGTCCGA 5931 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| |||| || | | || |||| || |||||||| ||| | || || Sbjct 5932 CTTTCGTCTCTGTTCGACGTATTAGTCTCACAGTCAAGCACCCTTATACCTTT 5984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351956020900