Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq4286 143 3e-32 seq4457 136 4e-30 seq2843 131 2e-28 seq4075 120 3e-25 >seq4286 Length=9999 Score = 143 bits (158), Expect = 3e-32 Identities = 143/181 (79%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGA 72 ||||||||||||||||||||| ||| | |||||| ||||| | |||| | |||||| Sbjct 3654 TTTACTTTGAAAAAATTAGAGTGTTTCAGGCAGGCAATTGCTTGGATACTGCAGCATGGA 3713 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT--AGGACCGCCCGTAATGAT 130 ||||| ||||||||| | | |||||| || ||||||| ||| | |||||||| Sbjct 3714 ATAATGGAATAGGACTTT--GACCTATTT-GTTGGTTTCTTGAGGTCAAA--GTAATGAT 3768 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 |||| ||| ||| ||||| || ||||| |||||||| ||||||||||||||||||||| Sbjct 3769 TAATAGGGACAGTTGGGGGCATCCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTAT 3828 Query 191 T 191 | Sbjct 3829 T 3829 >seq4457 Length=11085 Score = 136 bits (150), Expect = 4e-30 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| ||| Sbjct 5672 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCAT 5731 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 5732 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 5789 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 5790 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 5849 Query 190 T 190 | Sbjct 5850 T 5850 Score = 96.9 bits (106), Expect = 4e-18 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| || | |||| | | Sbjct 10167 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 10108 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||||||| ||||||||||||||| ||||| | ||| | | |||| Sbjct 10107 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 10050 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 10049 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 9994 >seq2843 Length=29081 Score = 131 bits (144), Expect = 2e-28 Identities = 142/183 (78%), Gaps = 9/183 (5%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGAATACATTACCATG 70 |||||| |||||||||||||| ||||||||||||| | || | | |||||||| |||| Sbjct 17495 TTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTAGGCCGTTGGATACATTAGCATG 17436 Query 71 GAATAATAGAATAGG---ACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 ||||||| ||||| ||| |||| ||||||||| ||||| | | ||||| Sbjct 17435 GAATAATGAGATAGGGCCACGA-CGGT-CTATTTTGTTGGTTTGCACGTTGTG--GTAAT 17380 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| || | | | || |||||| | |||||||||||||| |||||||||||||||||| Sbjct 17379 GATTAACAGGAACGGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 17320 Query 188 TAT 190 ||| Sbjct 17319 TAT 17317 Score = 131 bits (144), Expect = 2e-28 Identities = 138/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 19171 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 19112 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 19111 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 19054 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 19053 ACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 18996 Score = 125 bits (138), Expect = 7e-27 Identities = 138/180 (77%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATG 70 |||| ||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||| Sbjct 18820 TTTTGCTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATG 18761 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 | |||| | |||||| | |||| ||||| || || | ||| || |||||||| Sbjct 18760 GGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGAT 18703 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 18702 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 18643 Score = 123 bits (136), Expect = 3e-26 Identities = 136/178 (76%), Gaps = 5/178 (3%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATG 70 |||||||| |||||||||||||| |||| ||||||||| | || |||||| ||| |||| Sbjct 5011 CTTTTACTGTGAAAAAATTAGAGTGTTCCAAGCAGGCC-TAGCCTGAATACCTTAGCATG 4953 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 |||||||| ||||||| | || || |||| ||||| | || | |||||||| Sbjct 4952 GAATAATAACATAGGACTGTCTGT--GATGTTGTTGGTTTGCA--TCCAGCGGTAATGAT 4897 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 |||| ||| ||||||| | |||||| |||| ||||||||||||||||||| Sbjct 4896 TAATAGGGACGATCGGGGGCATTTCTATTCAGCAGTCAGAGGTGAAATTCTTGGATTT 4839 >seq4075 Length=11175 Score = 120 bits (132), Expect = 3e-25 Identities = 141/186 (76%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT--TTGC-TCGAATACAT 63 ||||| |||||||||| ||||||||| ||| ||||||||| | | || | |||||||| Sbjct 2194 AGGACAATTACTTTGAACAAATTAGAGTGTTTAAAGCAGGCATACTCGCCTTGAATACAT 2253 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 || |||||||||| |||||| | ||||||||||||| ||||| ||||| | Sbjct 2254 TAGCATGGAATAACCACTTAGGACTTT-GGTTCTATTTTGTTGGTTTTAAGGACTAAA-G 2311 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| || | | | || |||| | |||||| | ||| || ||||||||||||| Sbjct 2312 TAATGATTAACAGGAACCGTTGGGGCCATTAGTATTTAGTTGCCAGAGGTGAAATTCTTA 2371 Query 184 GATTTA 189 || ||| Sbjct 2372 GACTTA 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511933898080