Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq4107 163 3e-38 seq5238 141 9e-32 seq5349 127 2e-27 seq3950 114 1e-23 seq4587 111 1e-22 seq247 111 1e-22 seq4604 109 5e-22 seq3429 107 2e-21 seq4790 87.8 2e-15 >seq4107 Length=10989 Score = 163 bits (180), Expect = 3e-38 Identities = 132/156 (85%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||||||||||||| ||||||||||||||| ||| || ||||| Sbjct 6117 GTTGAGCGATGGCCCTTCCATTCAGAACCAC-GGATCACTATGACCTACTT-CGTACCTG 6174 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||| | ||| |||||||||||||| ||| |||||||||||||||| | ||| || Sbjct 6175 CTCCACGTGTCTGTCTCGCAGTCAAGCACACTTTTGCCATTGCACTAACCGTATGAT-TC 6233 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | |||| |||||||||||||||||||| Sbjct 6234 CGACCATACTTAGTGTACCTTCGTGCTCCTCCGTTA 6269 >seq5238 Length=5540 Score = 141 bits (156), Expect = 9e-32 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 901 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 960 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| | ||| |||||||||||| || ||||||||||||||||| | | ||| || Sbjct 961 CTCGAACTGTCGCTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAACAGCTGATTTC 1020 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | ||| ||||||| || ||||||||| Sbjct 1021 CGACCAGCTTGAGCCTACCTTCGCGCGCCTCCGTTA 1056 >seq5349 Length=5186 Score = 127 bits (140), Expect = 2e-27 Identities = 124/158 (78%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 2640 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 2581 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCA--CGATG 141 ||||| | ||| |||| |||||| || ||||||||||||||||| | ||| ||| Sbjct 2580 CTCGACCTGTCGGTCTCACAGTCAGGCAGGCTTATGCCATTGCACT--CGTCAGCTGATT 2523 Query 142 TCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||| || | ||| ||||||| || ||||||||| Sbjct 2522 TCCGTCCAGCTTGAGCCTACCTTCGCGCGCCTCCGTTA 2485 >seq3950 Length=12057 Score = 114 bits (126), Expect = 1e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | ||||||||||||||| ||| |||||| ||||| Sbjct 6520 GTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTAAAGCCTACTTTCGTACCTG 6579 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| ||||| |||||||||||||| ||||||| ||||||| Sbjct 6580 CTCGACCCGTCGGTCTCGCAGTCAAGCTCCCTTATGCTTTTGCACT 6625 >seq4587 Length=8477 Score = 111 bits (122), Expect = 1e-22 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | |||||||||||||||| |||||||||||||||| Sbjct 5590 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTTAAGCCTGCTTTCGCACCTGT 5531 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGC 110 ||||| |||| ||||| ||||||||| Sbjct 5530 TCGAGGCGTCCCTCTCTCAGTCAAGC 5505 >seq247 Length=422015 Score = 111 bits (122), Expect = 1e-22 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | |||||||||||||||| |||||||||||||||| Sbjct 814 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTTAAGCCTGCTTTCGCACCTGT 873 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGC 110 ||||| |||| ||||| ||||||||| Sbjct 874 TCGAGGCGTCCCTCTCTCAGTCAAGC 899 >seq4604 Length=8381 Score = 109 bits (120), Expect = 5e-22 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| Sbjct 6841 TTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATATCCAACTTTCGTTCCTGG 6782 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || | |||| ||||||||| ||||||| |||||||| Sbjct 6781 TCGACTTGTTAGTCTCACAGTCAAGCACCCTTATGCTATTGCACT 6737 >seq3429 Length=16784 Score = 107 bits (118), Expect = 2e-21 Identities = 94/116 (81%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| Sbjct 5264 TTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATATCCAACTTTCGTTCCTGG 5323 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGAT 140 |||| || | |||| ||||||||| ||||||| ||||| || ||| || ||| Sbjct 5324 TCGACTTGTTAGTCTCACAGTCAAGCACCCTTATGCTATTGC-CTCACCGCATGAT 5378 >seq4790 Length=7436 Score = 87.8 bits (96), Expect = 2e-15 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||||||| ||||| ||||||||||| | || |||||| ||| Sbjct 5884 GTTGAGCGACGGCCCTTCCATTCGGAACCGCCGGATCACTAAGTCCGACTTTCGTCTCTG 5943 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||| | | |||| ||||||||| ||||| || || | || | | ||| | Sbjct 5944 TTCGACGTATTAGTCTCACAGTCAAGCACCCTTATACCTTTACGCTCTACGCCTGATTGC 6003 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | |||||||||||| Sbjct 6004 CAACCAGGCTGAGGGTACCTTTGAGCTCCTCCGTTA 6039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473538855724