Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2843 309 6e-82 seq4457 257 3e-66 seq4286 255 1e-65 seq4075 241 2e-61 seq3262 196 9e-48 seq4254 114 2e-23 seq133 84.2 4e-14 >seq2843 Length=29081 Score = 309 bits (342), Expect = 6e-82 Identities = 229/264 (87%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 16863 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGG 16805 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 16804 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 16745 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 16744 CTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 16686 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 16685 TCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCG 16626 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 16625 TTGACTACGTCCCTGCCCTTTGTA 16602 Score = 257 bits (284), Expect = 3e-66 Identities = 216/260 (83%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||| Sbjct 4388 CTTCTTAGAGGGACTATCGATGTCAAGTCGATGGAAGTTGGGGGCAATAACAGGTCTGTG 4329 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT-TCATC 189 ||||||||||| ||||||||||||||||||||||||||||| ||||||||| | Sbjct 4328 ATGCCCTTAGACGTTCTGGGCCGCACGCGCGCTACACTGACTAGTCCAACGAGTGTTTGT 4269 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTCGTGCTGGGGATAGAGCAT 248 ||||| || | ||| |||| ||||| | ||| || |||||| | ||||| || | Sbjct 4268 ACCTTTGCTGATAGGCATGGGCAATCT--CTGAACACTAGTCGTGATAGGGATCGATTTT 4211 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 || ||||||| || |||||||||||| |||||||| |||| ||||||||| ||| |||| Sbjct 4210 TGGAATTATTAATCGTCAACGAGGAATTCCTAGTAAACGCGAGTCATCAGCTCGCATTGA 4151 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 4150 TTACGTCCCTGCCCTTTGTA 4131 Score = 185 bits (204), Expect = 2e-44 Identities = 193/257 (75%), Gaps = 30/257 (12%) Strand=Plus/Minus Query 101 ATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGC 160 |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 27502 ATGGAAGTGAGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCTGCACGCGC 27443 Query 161 GCTACACTGACAGAGCCAACGAGT----------TCA-TCACCTTGGCCGG--------- 200 |||||||||||| |||| ||| ||| || ||||| || Sbjct 27442 GCTACACTGACAAGTTCAACAAGTATGTCTTTTATCACTCGCCTTGCGTGGGTGTTGATC 27383 Query 201 ---------AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 || | |||||||||||| | ||| ||||||||| |||||||| ||||| Sbjct 27382 CTGCATGGAAACATGTGGGTAATCTTGAAAGACT-TGTCGTGCTTGGGATAGACGATTGC 27324 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 ||||||| |||| |||||||||| |||||||| ||| ||||||| || |||||| Sbjct 27323 AATTATTTGTCTTGAACGAGGAATTCCTAGTAAACGCAAATCATCAGTTTGCATTGATTT 27264 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 27263 CGTCCCTGCCCTTTGTA 27247 >seq4457 Length=11085 Score = 257 bits (284), Expect = 3e-66 Identities = 246/305 (81%), Gaps = 14/305 (5%) Strand=Plus/Minus Query 34 CCTGCTAAATAGCCAGGCC--CGCTTTGGCG--GGTCGCCGGCTTCTTAGAGGGACTATC 89 |||||||||||| ||| ||||| | | ||| || |||||||||||||||| || Sbjct 8729 CCTGCTAAATAGTGTGGCTTACGCTTCTGTGTAGGT-GCTCGCTTCTTAGAGGGACTTTC 8671 Query 90 GGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTG 148 || | | |||| ||||||| | |||||||||||||||||||||||||||||||| ||| Sbjct 8670 GGTGACTAACCGAAGGAAGTTGG-GGCAATAACAGGTCTGTGATGCCCTTAGATGTCCTG 8612 Query 149 GGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC----ATCACCTTGGCCGGAAGG 204 |||||||||||||||||||||| | |||||||||| | ||| || || ||| Sbjct 8611 GGCCGCACGCGCGCTACACTGATGCATGCAACGAGTTCTTTTTTTTCCTGGGTCGAGAGG 8552 Query 205 TCTGGGTAATCTTGTTAAAC-TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCT 263 | |||||||| |||| ||| | ||||| | |||||||| |||||||||||||| ||| Sbjct 8551 CCCGGGTAATC-TGTTGAACGTGCATCGTGATAGGGATAGATCATTGCAATTATTGATCT 8493 Query 264 TCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCT 323 | |||||||||| ||||||| |||| ||||||||| ||| ||||||||||||||||||| Sbjct 8492 TGAACGAGGAAT-TCTAGTAAACGCGAGTCATCAGCTCGCATTGATTACGTCCCTGCCCT 8434 Query 324 TTGTA 328 ||||| Sbjct 8433 TTGTA 8429 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 9526 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 9469 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 9468 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 9409 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 9408 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 9349 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 9348 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 9289 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 9288 AAGTCCCTGCCCTTTGTA 9271 >seq4286 Length=9999 Score = 255 bits (282), Expect = 1e-65 Identities = 249/316 (79%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCG---GGTCGCCGGCTTCT 76 || ||||||||||||||||||| ||| | | || || || || ||||| Sbjct 4228 GAACGAGACCTTAACCTGCTAACTAGTTA---CTTCTATGTAAATAGGAGGCTAACTTCT 4284 Query 77 TAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 |||||||||| | | ||||| | |||||||||||||||||||||||||||||||||| Sbjct 4285 TAGAGGGACTTTGTGTGCAAGCACAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 4344 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG--TTCATCACCTT 194 |||||||| ||||||||||||||||||||||||||| | |||| || || | ||| Sbjct 4345 TTAGATGTCCTGGGCCGCACGCGCGCTACACTGACATATGCAACAAGCTTTACTTTCCTG 4404 Query 195 GGCCGGAAG-GTCTGGGTAATCTTGT-TAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 |||||| || |||||||||||| ||| | ||||||||| |||||||| | ||| | Sbjct 4405 TCTCGGAAGAGTACGGGTAATCTTGTATAATGTATGTCGTGCTAGGGATAGATCTTTGGA 4464 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||||| | |||| |||||||||| |||||||||| ||||||||| | | ||||||| Sbjct 4465 ATTATAGATCTTGAACGAGGAATTCCTAGTAAGCATAAGTCATCAGCTTGTGCTGATTAC 4524 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 4525 GTCCCTGCCCTTTGTA 4540 >seq4075 Length=11175 Score = 241 bits (266), Expect = 2e-61 Identities = 243/313 (78%), Gaps = 5/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGG--GTCGCCGGCTTCTT 77 || |||||||||||||| |||||||| | || | | | || || |||||| Sbjct 2782 GAACGAGACCTTAACCTACTAAATAGTTACGCGATCAATCCTGATCGTGGCGAACTTCTT 2841 Query 78 AGAGGGACTAT--CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||| | || | || || | ||||||||||||||||||||||||||||||||| Sbjct 2842 AGAGGGACTTTTGCGTGTTAAACCAAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 2901 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||| ||||| ||||||||||||||||||||||||| | ||||||||| ||| | Sbjct 2902 CTTCGATGTCCTGGGCCGCACGCGCGCTACACTGATGAATGCAACGAGTTTTGACCCTAG 2961 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 ||| ||||| |||||||||| | ||| | | ||||| ||||||| | |||| |||| Sbjct 2962 ACCGTTAGGTCCGGGTAATCTT-TGAAAGTTTATCGTGATGGGGATCGTTGATTGTAATT 3020 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 || | | |||||||||| ||||||||| ||| ||||||| | |||| ||||| |||| Sbjct 3021 TTTCAACGTAAACGAGGAATTCCTAGTAAGTGCGAGTCATCAACTCGCGCTGATTTCGTC 3080 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 3081 CCTGCCCTTTGTA 3093 >seq3262 Length=19006 Score = 196 bits (216), Expect = 9e-48 Identities = 207/270 (77%), Gaps = 17/270 (6%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||||| | | || | | |||||| |||| ||||||||||||| Sbjct 4312 CTTCTTAGAGGGACTATTGATTTTTAAATCAAAGGAAGTAA-AGGCGATAACAGGTCTGT 4370 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||||| |||||||||||||| ||| ||| |||||||| || Sbjct 4371 GATGCCCTTAGATGTTCTGGGCTGCACGCGCGCTACAATGATAGACTCAACGAGTATATA 4430 Query 190 A----------CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC-TCTGTCGTGCTGGG 238 | ||| ||| |||| ||| ||||| |||||| | | ||||||| || Sbjct 4431 AATTTATTATTGCTTATCCGAAAGGATTGGCTAATC---TTAAACGTTTATCGTGCTTGG 4487 Query 239 GATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298 |||||| ||||||||||| |||| ||| |||||| |||||||| || | ||||||| Sbjct 4488 GATAGATGCTTGCAATTATTTATCTTGAACCAGGAATTCCTAGTAATCGTATATCATCAG 4547 Query 299 CACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||| ||||| Sbjct 4548 TGTGCGATGATTACGTCCCTGCCCCTTGTA 4577 >seq4254 Length=10165 Score = 114 bits (126), Expect = 2e-23 Identities = 192/259 (74%), Gaps = 23/259 (9%) Strand=Plus/Minus Query 83 GACTATCGGCTCAAGCCGATGGAAGTTTGAGG-CAATAACAGGTCTGTGATGCCCTTAGA 141 |||| |||| | | |||| ||||||| | || ||||||||||||||||||||||||||| Sbjct 4870 GACTTTCGG-TGATACCGAAGGAAGTTGGGGGGCAATAACAGGTCTGTGATGCCCTTAGA 4812 Query 142 TGTTCTGGGCCGCACGCG-CGCTACACTGACAG-AGCCAACGAGTTC----ATCACCTTG 195 ||| |||||| ||||| ||||||||||| | | |||||||||| | ||| Sbjct 4811 TGTCCTGGGCGCAACGCGTCGCTACACTGATTGCATGCAACGAGTTCTTTTTTTTCCTGC 4752 Query 196 GCCGGAAGGTC--TGGGTAATCTTGTTAAACTCTGTCGT-GCTG--GGGATAGAGCATTG 250 | || || | ||||||||| |||| || || | | |||| || || ||||| Sbjct 4751 GTCGAGCGGCCCTTGGGTAATC-TGTTGTACGCTTGCATCGCTGATAGGTTAATTCATTG 4693 Query 251 CAATTATTGCTCTTCA-ACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||| || |||| | ||||| || |||| |||| ||||||||| ||| ||||| Sbjct 4692 C-ATTA-TGATCTTGATACGAG---CTTCTTGTAA-CGCGCGTCATCAGCTCGC-TTGAT 4640 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||| Sbjct 4639 TACGT-CCTGCCCTTTGTA 4622 >seq133 Length=530177 Score = 84.2 bits (92), Expect = 4e-14 Identities = 84/107 (79%), Gaps = 9/107 (8%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGG---CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 ||||||||| ||| || ||| || | |||| || |||| | |||| |||||||||| Sbjct 71615 GCTTCTTAGGGGGGCTTCCGGTGACTTA--CCGAAGGGAGTTGGGGGCATTAACAGGTCT 71672 Query 128 GTGATGCCCTT----AGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 || |||||| | |||||| ||||||||| ||||||||||||||| Sbjct 71673 GTCATGCCCGTCCATAGATGTCCTGGGCCGCTCGCGCGCTACACTGA 71719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947073766656