Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq4587 241 3e-61 seq247 221 3e-55 seq7140 179 8e-43 seq3429 172 1e-40 seq9799 168 1e-39 seq4107 152 1e-34 seq3561 150 4e-34 seq5912 149 1e-33 seq11281 138 2e-30 seq5166 129 1e-27 seq2601 104 5e-20 seq359 77.0 7e-12 >seq4587 Length=8477 Score = 241 bits (266), Expect = 3e-61 Identities = 270/359 (75%), Gaps = 4/359 (1%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| ||||||||| || |||| || || | | | | Sbjct 1443 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCTTACAGTACCGTCAGGCCCTTATAAAT 1384 Query 61 GGAAGGT--TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCAC 118 |||| ||| |||| || ||||| ||||||||| || ||| || ||||||| ||| Sbjct 1383 --AAGGGCGTTTCTTCCTGTACAAAAGCAGTTTACAACCCATAGGGCCGTCATCCTGCAC 1326 Query 119 GCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGT 178 || | ||||| |||| || || |||||| ||||||||||| ||||||||||||||| Sbjct 1325 GCGGGATAGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCTTACTGCTGCCTCCCGT 1266 Query 179 AGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCC 238 |||||| || |||||||||||| || |||||||| || |||||| |||||| | Sbjct 1265 AGGAGTCGGGTCCGTGTCTCAGTACCCGTGTGGGGGGCCACGCTCTCACGCCCCCTAGCT 1206 Query 239 ATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTA 298 ||||||| || ||| ||||||||| || |||| ||||| | ||||| || ||| | Sbjct 1205 ATCGTAGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATAGCACGCACGCCTATCTTC 1146 Query 299 CACCGATGAATCTTTAATGATGATACCATGCAATCTCATCATACCATCAGGTATTAATC 357 | ||| ||||||||| || | ||||||| |||| ||||||| ||||||||| Sbjct 1145 AAGCGACTGATCTTTAATCATAAAACCATGCGGCTTCATGATACCATGGAGTATTAATC 1087 >seq247 Length=422015 Score = 221 bits (244), Expect = 3e-55 Identities = 260/343 (76%), Gaps = 13/343 (4%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||| ||| ||||||||| ||| |||||||||||| |||| ||| | | || Sbjct 5048 GGCTTCTG--ACGGAGTTA-CCGGTGCTTATTCATATGGTAGCGGCAATTTGTCTGCGGT 5104 Query 61 GGAAGG--TTTTATTCC--CTTATAAAAGAAGT-TTACAATCCGTAGAA--CCTTCATCC 113 | ||| |||| |||| | ||||||| ||| |||||| || |||| || || ||| Sbjct 5105 GCAAGACTTTTTCTTCCACCATATAAAATCAGTATTACAACCC--AGAAGGCCGTCTTCC 5162 Query 114 TT-CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 | ||||| | ||||||| ||||||| |||||||||| |||||||||| ||||||||| Sbjct 5163 TGGCACGCGGCATGGCTGGGTCAGACTTTCGTCCATTGCCCAATATTCCCTACTGCTGCC 5222 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| ||| |||||||||||| ||| ||||||||| |||||||||| ||| Sbjct 5223 TCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATAATCCTCTCAGACCCC 5282 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCC 292 ||| |||||||| || |||| || ||||| | || |||| |||||| ||||| | | Sbjct 5283 CTAAACATCGTAGCCTTGGTGAGCTTTTACCTCTCCAACTAGCTAATGTTGCGCATACTC 5342 Query 293 ATCGTACACCGATGAATCTTTAATGATGATACCATGCAATCTC 335 ||| | |||| ||| ||||||| | | | |||| ||||| Sbjct 5343 ATCCCAAACCGCCGAAGCTTTAATAACAAGATGATGCCATCTC 5385 >seq7140 Length=1853 Score = 179 bits (198), Expect = 8e-43 Identities = 176/225 (78%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||| || ||| |||||||| ||||| | ||||| | |||| | || |||| Sbjct 756 TTTACAACCC-TAGGGCCTTCATCACACACGCGGCATGGCTCGGTCAGGGTTTCCCCCAT 698 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || ||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 697 TG--CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 640 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || | |||||||||| | |||| ||||| |||| ||| |||| ||||||| || Sbjct 639 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGGCTTGGTAGGCCATTACCCCACC 580 Query 269 TACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 |||||||||| ||||| |||||| | | |||| ||||||| Sbjct 579 AACTACCTAATCCAACGCGGGCCCATCCAATAGCGATAAATCTTT 535 >seq3429 Length=16784 Score = 172 bits (190), Expect = 1e-40 Identities = 273/373 (73%), Gaps = 25/373 (7%) Strand=Plus/Plus Query 1 GGCTG-CTGGCACGGAGTTAGCCGATGCTTATTCATAAGGT-ACATACAAGCTCCCACAC 58 ||||| |||||||||||||||||| ||||||||| || || || ||| | | | | Sbjct 9315 GGCTGGCTGGCACGGAGTTAGCCGTTGCTTATTCCTACAGTGACCGTCAATGTGTCTCGC 9374 Query 59 GTGGAAGGTTTTATTCCCTTATAAAA-GAAGTTTACAATCCGTAGAA--CCTTCATCCTT 115 | | | ||| |||| || |||| | ||||||||| || |||| || ||||||| Sbjct 9375 GCAAGACGCTTTCTTCCTGTAGAAAAAGCAGTTTACAACCC--AGAAGGCCGTCATCCTG 9432 Query 116 --CACGCTACTTGGCTGG-TTCAGACTCTCGTCCATTGACC--AATATTCCTCACTGCTG 170 ||||| | |||||| ||||| |||| | |||||||| ||||||| ||||||| Sbjct 9433 AGCACGCG-CATGGCTGACTTCAGGCTCT-GCGCATTGACCGCAATATTCT--ACTGCTG 9488 Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT-CAGAA 229 |||||||||||||| |||||||||||||||||||| ||| ||||| | |||||| |||| Sbjct 9489 CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT-GGGGATCATCCTCTGCAGAC 9547 Query 230 CCCCT----ATCCATCGTAGGCTAGGTGGGC-CGTTACCCCGCCTACTACCTAATGGAAC 284 ||||| || ||| | | ||||||| || ||||||| | || |||| ||||| || Sbjct 9548 CCCCTACTGATGCAT--TCGTCTAGGTGAGCGCGTTACCTCACCAACTAACTAATCAGAC 9605 Query 285 GCATCCCCATCGTACACCGATGAATCTTTAATGATGATACCATGCAATCTCATCATACCA 344 |||| | |||| || || ||||||||| || | |||| ||| || || | Sbjct 9606 GCATGCTCATCCATTACAAATAAATCTTTAACCATCTTCAGATGCCATCAAATGGTAGTA 9665 Query 345 TCAGGTATTAATC 357 | |||||||||| Sbjct 9666 TGGGGTATTAATC 9678 >seq9799 Length=801 Score = 168 bits (186), Expect = 1e-39 Identities = 223/313 (71%), Gaps = 20/313 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||| ||| ||||| || Sbjct 620 GGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCTGCTGGTACCGTCA------------- 574 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| | ||||| ||||||| || || |||||||| |||||| Sbjct 573 ------TTATCTTCCCAGCTGAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGC 521 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||| | |||| | | |||||| | || ||||| |||||||||||||||||| Sbjct 520 GGCATGGCTAGATCAGGGTTGCCCCCATTGTCTAAGATTCCCCACTGCTGCCTCCCGTAG 461 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||| | | |||| || Sbjct 460 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAAACCAGCTATGGAT 401 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| |||| ||| |||| ||||||| || |||||||||| ||||| || ||| | Sbjct 400 CGTCGGCTTGGTAGGCCATTACCCCACCAACTACCTAATCCAACGCGGGCCGATCCTTTG 341 Query 301 CCGATGAATCTTT 313 ||||| ||||||| Sbjct 340 CCGATAAATCTTT 328 >seq4107 Length=10989 Score = 152 bits (168), Expect = 1e-34 Identities = 149/191 (78%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||| ||| || ||||| || ||||| | |||||| |||| | || |||| Sbjct 10461 TTTACAACCCGAAGG-CCTTCTTCACACACGCGGCATGGCTGCATCAGGGTTTCCCCCAT 10519 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || ||||||||| |||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 10520 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 10579 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 ||| || |||||||||||||| ||| ||||| | || |||| ||| ||||| | || Sbjct 10580 TGGCTGATCTTCCTCTCAGAACAGCTAGAGATCGTTGCCTTGGTGAGCCTTTACCTCACC 10639 Query 269 TACTACCTAAT 279 |||| ||||| Sbjct 10640 AACTAGCTAAT 10650 >seq3561 Length=15242 Score = 150 bits (166), Expect = 4e-34 Identities = 218/303 (72%), Gaps = 11/303 (4%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTA------CA--TACAAGCTC 52 ||||||||||||||||||||||| ||||| ||| |||||| || | | |||| Sbjct 3610 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTAAAGGTAACGTCACAGTTGCTAGCTA 3669 Query 53 CCACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 | || | || ||| | || | | |||| ||||||| || || ||||| || Sbjct 3670 TTA-ACCAGCAACCTTTCCTCCCAAT-TGAAAGTGCTTTACAACCCTAAGG-CCTTCTTC 3726 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 ||||| |||||| |||| | || |||||| ||||||||| |||||||||| Sbjct 3727 ACACACGCGGTATGGCTGCGTCAGGGTTTCCCCCATTGCGCAATATTCCCCACTGCTGCC 3786 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| ||| |||||||||||| ||| ||||| || | |||||||||| | Sbjct 3787 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAG 3846 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCC 292 |||| ||||| | || |||| || ||||| | || || | ||||| |||||| | | Sbjct 3847 CTATAGATCGTCGCCTTGGTGAGCTCTTACCTCACCAACAAGCTAATCTAACGCAGGCTC 3906 Query 293 ATC 295 ||| Sbjct 3907 ATC 3909 >seq5912 Length=3706 Score = 149 bits (164), Expect = 1e-33 Identities = 214/297 (72%), Gaps = 16/297 (5%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCA-TAAGGTACAT-ACAAGCTCCCACAC 58 ||||||||||||||||||||||| | ||| ||| |||| | | | ||| || Sbjct 296 GGCTGCTGGCACGGAGTTAGCCGGTACTTCTTCTGTAAGTAATGTCATAAG-----ACTG 350 Query 59 GTGGA-------AGGTTTTATTCCCTTA-TAAAAGAAGTTTACAATCCGTAGAACCTTCA 110 | | | || |||| | ||||| | |||| ||||||| || || ||||| Sbjct 351 GGGTATTAACCCAGCTTTTTCTTCCTTACTGAAAGTGCTTTACAACCCTAAGG-CCTTCT 409 Query 111 TCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTG 170 || ||||| | |||||| |||| || ||| |||||| ||||||||| ||||||| Sbjct 410 TCACACACGCGGCATGGCTGCATCAGGCTTTCGCCCATTGTGCAATATTCCCTACTGCTG 469 Query 171 CCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAAC 230 |||||||||||||| |||||||||||||||||||| ||||| || | |||||||| | Sbjct 470 CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCGCCCTCTCAGCCC 529 Query 231 CCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCA 287 ||| ||||| | || |||| ||| ||||| | || |||| ||||| ||||| Sbjct 530 AGCTAAGGATCGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAATCCTACGCA 586 >seq11281 Length=638 Score = 138 bits (152), Expect = 2e-30 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 155 ATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGG 214 ||||||| |||||||||||||||||||||| ||| |||||||||||| ||| ||||| | Sbjct 1 ATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTG 60 Query 215 ACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTAC 274 | | |||||||||| | ||| | |||| || || ||| |||| ||||||| || |||| Sbjct 61 ATCGTCCTCTCAGACCAGCTACCGATCGCAGACTTGGTAGGCCATTACCCCACCAACTAT 120 Query 275 CTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 ||||| | |||| |||||| | |||| ||||||| Sbjct 121 CTAATCGGACGCGGGCCCATCTAGAAGCGATAAATCTTT 159 >seq5166 Length=5470 Score = 129 bits (142), Expect = 1e-27 Identities = 138/176 (78%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || ||||| | ||||||| |||| || ||| |||||| |||||||||| || Sbjct 224 CCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCA 283 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||||||||||||||| ||| |||||||||||| ||| ||||| || | |||||| Sbjct 284 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 343 Query 225 CAGAACCCCTAT-CCATCG-TAGGCTAGGTGGGCCG-TTACCCCGCCTACTACCTA 277 | ||| | ||| |||| || || |||| |||| ||||| | || |||| ||| Sbjct 344 C-GAA-CAGTATGGAATCGCCAGTCTTGGTGCGCCGCTTACCACACCAACTAACTA 397 >seq2601 Length=37044 Score = 104 bits (114), Expect = 5e-20 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 72 TTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCC-TTCACGCTACTTGGCTG 130 |||| | || |||||| ||||||| | ||| |||||| | ||||||| | | | Sbjct 6648 TTCCTTAATGAAAGAATTTTACAACTCAAAGAGTCTTCATTCATTCACGCAGTATCGTAG 6707 Query 131 GTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGAC 190 | ||| | || ||||| ||||||||||||||||||||||| |||| |||||||| | Sbjct 6708 GATCAAGGTTTCCCTCATTGTCCAATATTCCTCACTGCTGCCTCTCGTAAGAGTTTGGGC 6767 Query 191 CGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAG 250 ||| ||||| | ||||||||| | | || ||| ||| ||| ||| | |||| | Sbjct 6768 CGTCTCTCAATCCCAATGTGGTTGTTCAATCTTTCAAAACAACTAAGGATCTTTGGCTTG 6827 Query 251 GTGGGCCGTTACCCCGCCTACTACCTAAT 279 || || ||| | || |||||||||| Sbjct 6828 GTAAGCTTTTATCTTACCAACTACCTAAT 6856 >seq359 Length=352878 Score = 77.0 bits (84), Expect = 7e-12 Identities = 136/186 (73%), Gaps = 12/186 (6%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| |||||||| || | ||||| || |||||| | | ||||| ||| | | Sbjct 39215 AAAGA-GTTTACAACCCTAATGGCCTTCTTCACTCACGCGGCATTGCTGG--CAG-CGGT 39270 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 |||||| | |||||||| ||||||||| |||||||||| ||| ||||||||||| Sbjct 39271 TTCCCATTGTC-AATATTCCCCACTGCTGCT--CCGTAGGAGTCTGGGCCGTGTCTCAG- 39326 Query 202 TCCAATGTGG-GGGACCTTCCTCTCAGAACCCCTA-TCCATC-GTAGGCTAGGTGGGCCG 258 |||| ||||| | | | |||||||| |||| || | ||| | | || ||| |||| Sbjct 39327 TCCAGTGTGGCTGTATCATCCTCTCA-AACCAGTACTTGATCTTTCGCCTTGGTAAGCCG 39385 Query 259 TTACCC 264 |||||| Sbjct 39386 TTACCC 39391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068657561024