Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2843 134 2e-29 seq4286 125 1e-26 seq7372 104 4e-20 seq133 95.1 2e-17 seq4075 80.6 4e-13 seq2653 78.8 2e-12 >seq2843 Length=29081 Score = 134 bits (148), Expect = 2e-29 Identities = 102/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | ||| || |||||||||| || || || |||| |||||||| Sbjct 20701 GTACGAGAGGAACCGTTGG-TTCGGA-TAATTGGTTTATGGGGTTGCCTGAACAGGCAGT 20644 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||| Sbjct 20643 GCCCCGAAGCTACCATCCGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGC 20586 Score = 129 bits (142), Expect = 1e-27 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| | ||||||||| ||||| || ||||| ||||| | Sbjct 9422 GTACGAGAGGAACCGTTGG-TTCACA-TAATTGGTTCATGCGGTTGCCTGACAAGGCAAT 9365 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||||||||||||||| ||| |||| | ||||||||||||||||| |||||||||||| Sbjct 9364 GCCGCGAAGCTACCATGTGCAGGATAACGGCTGAACGCCTCTAAGCCAGAATCCATGC 9307 >seq4286 Length=9999 Score = 125 bits (138), Expect = 1e-26 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | |||| |||| |||||||| | ||| | |||| ||| ||| Sbjct 8251 GTACGAGAGGAACCCCTGAAT-CAGA-TAATTGGTAAATACGGTTAGCTGAACAGCTAGT 8308 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 8309 GCCGTGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGC 8366 >seq7372 Length=1670 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 582 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 525 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 524 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 471 >seq133 Length=530177 Score = 95.1 bits (104), Expect = 2e-17 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 27 ATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATT 86 |||||||||| || || | |||| |||||||||| || |||||||||| | ||||| Sbjct 506633 ATAATTGGTTCATGGGGTTTCCTGAACAGGCAGTGCTCCGTAGCTACCATCCGTAGGATT 506692 Query 87 ATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| | ||||||||||||| |||||||||||| Sbjct 506693 ATGACAGAACGCCTCTAAGCCAGAATCCATGC 506724 >seq4075 Length=11175 Score = 80.6 bits (88), Expect = 4e-13 Identities = 90/118 (76%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || | |||||||| ||| ||||||| | | || | Sbjct 7894 GTACGAGAGGAACCGTTCTATCACG--TAATTGGTAAC-GCGCTTGTCTGAACGGACATT 7950 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | ||| ||||||||| || |||||| ||||||||||||||||||| ||||||| || Sbjct 7951 GGCGCAAAGCTACCACGTGTCGGATTACGGCTGAACGCCTCTAAGTCGGAATCCACGC 8008 >seq2653 Length=35011 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| ||||||||||||| | |||||||| |||| ||||||||||||||||||||||| Sbjct 27328 GCCCCGAAGCTACCATCCGTAGGATTATGACTGAGCGCCTCTAAGTCAGAATCCATGC 27385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819094236928