Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2386 132 5e-26 >seq2386 Length=46605 Score = 132 bits (146), Expect = 5e-26 Identities = 440/631 (70%), Gaps = 54/631 (9%) Strand=Plus/Plus Query 160076 AACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGG--CATCTATGCCTATA 160133 || ||||| |||| |||| | | || ||||| ||| | || || | ||| || | | Sbjct 37297 AATGGTGG-CCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGCTTCT-TGT-TGGA 37353 Query 160134 TGGGTCGTGAGTGGGAA-CTCTCTTACCGTCTC--GGTATGCGTCCCTGGATCTGT-GTT 160189 |||||||||| |||||| || ||| || | ||||||||||| || || | | || Sbjct 37354 TGGGTCGTGAATGGGAAACTTAGCTACGGTGTTTAGGTATGCGTCCTTG-ATGTTTCGTA 37412 Query 160190 GCATACTCTGCTCCAGTCG-CTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGG-TC 160247 |||| ||||| || ||| | | || ||| |||| |||||| | | ||||| ||||| || Sbjct 37413 GCATTCTCTG-TCAAGTAGACAGCAGCT-CTGCGGTATTC-TAATTTACCC-TTCGGATC 37468 Query 160248 AG-GGTTCTTTCTCC-GATGCTATGCCTCTTGGTATC--TCTGGTA-CTTTTAACTATAT 160302 | ||| ||||| | || | ||||| | |||||| ||||||| | ||||||| || Sbjct 37469 AATGGTAGTTTCTGCTGACGGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCAT 37528 Query 160303 GCTTG-TATTCCAA--GCA-GAACACAATATCCTTATGCATCCG--TTCCACA-TGCTCG 160355 | | | | |||||| || ||||| || | | ||||| | | ||||| | || | Sbjct 37529 GATCGGTTTTCCAAAAGCTCGAACATAACTTT-TAATGCACCTGGATTCCATAATGGCTG 37587 Query 160356 GTGTTGCTGGG-GTATTCGGTGGATCTCTGTTCTCTGCTAT-GCATGGATCT-CTGGTTA 160412 |||||||||| || |||| ||| | | || |||||| |||||| ||| || || | Sbjct 37588 GTGTTGCTGGATGTTTTCG-TGGTTATTATATCAGTGCTATCGCATGGTTCTTCTAGTAA 37646 Query 160413 CTTCTAGTCTCGTCAGAGAGACGACA-GAAACTGAGTCCCAGAACTATGGTTACAAG-TT 160470 ||| ||| | | | || |||| ||| ||| || || || |||||||| || Sbjct 37647 -TTCAAGTTTAATACGTGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATT 37704 Query 160471 CGGTCA-AGAG-GAAGAGACTTACAACATCGTCGCAGCACAT-GGCTACTTCGG--TCGT 160525 ||| || ||| ||||| ||||||||||| || || |||||| || ||||| || ||| Sbjct 37705 CGGACAGAGATAGAAGAAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGT 37764 Query 160526 TTGATCTT--CCAATATGCATC-CTTTAACAACTCACGCT-----CTCTGCACTTCTTCC 160577 || ||||| || || ||| | || ||||| || || || | || ||||||| Sbjct 37765 TTAATCTTGCGCAGTA-GCAGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCC 37823 Query 160578 TCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCAT 160637 | || || ||||||| ||||| || ||||| || || | |||| || ||| ||||||| Sbjct 37824 TTGC-GCATGGCCTGAAGTTGGGATTTGGTTAACAGCTTTAGGTG-TTGTACTATGGCAT 37881 Query 160638 TCAATCTCAATGGTTTCAACTTCAACCAGTC 160668 | || | |||||||| | ||| |||||||| Sbjct 37882 TTAACTTAAATGGTTT-AGCTTTAACCAGTC 37911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551284147650600