Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq4604 91.5 2e-13 seq4750 87.8 2e-12 seq5390 84.2 3e-11 >seq4604 Length=8381 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||| ||||||||| | | |||||||||||| ||||| ||||||||| ||||||||||| Sbjct 3039 GGGGGATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCATCGGTTCGAA 3098 Query 19389 TCCGATATTCTCCA 19402 |||||||| ||||| Sbjct 3099 TCCGATATCCTCCA 3112 >seq4750 Length=7679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 19331 GGGGAATTAGCTCAACGG--TAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAA 19388 |||||||||||||| | | |||||| ||||| ||||| ||||| ||| |||||||||| Sbjct 5231 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 5290 Query 19389 TCCGATATTCTCCATAA 19405 |||||||||||||| || Sbjct 5291 TCCGATATTCTCCACAA 5307 >seq5390 Length=3170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 19331 GGGGAATTAGCTCAAC-GGTAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAAT 19389 |||| |||||||| | || ||||||||||||||||||||||||||| |||||||||| Sbjct 2741 GGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGATC 2682 Query 19390 CCGATATTCTCCA 19402 |||||| ||||| Sbjct 2681 CCGATAGGCTCCA 2669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633974370198000