Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq4750 96.9 5e-15 seq7597 95.1 2e-14 seq4604 89.7 7e-13 >seq4750 Length=7679 Score = 96.9 bits (106), Expect = 5e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 5231 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 5290 Query 142852 TCCGTTATTCTCCACCAA 142869 |||| |||||||||| || Sbjct 5291 TCCGATATTCTCCACAAA 5308 >seq7597 Length=1512 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 142791 TCGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 ||||||| ||||||| |||||||||| ||||||||||||||||||||| | ||||| | Sbjct 323 TCGGGGACGTAGCTCAATTGGTAGAGCACCTGCTTTGCAAGCAGGATGTTATGGGTTCAA 264 Query 142851 GTCCGTTATTCTCCACCAAC 142870 |||| || ||||||||||| Sbjct 263 GTCCCTTCGTCTCCACCAAC 244 >seq4604 Length=8381 Score = 89.7 bits (98), Expect = 7e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 142792 CGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGA 142850 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 4063 CGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 4122 Query 142851 GTCCGTTATTCTCCAC 142866 |||| ||| |||||| Sbjct 4123 CTCCGATATCCTCCAC 4138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691344011540520