Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq158 208 1e-51 >seq158 Length=6176 Score = 208 bits (230), Expect = 1e-51 Identities = 194/244 (80%), Gaps = 18/244 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 3301 GTACAAAGGGCAGGGACGTATTCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 3244 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 ||||||| ||| || |||||||| ||||| ||||| ||||||| ||||||| ||| Sbjct 3243 CTCGTTGGAGATTAATAATTGCAAAAATCTAGCCCCAGCACGATGGGCGTTCAAAGGATT 3184 Query 120 ACCCGGACCTGTCGGCCAAGG-----TG----------ATAGACTCGTTGAATACATCAG 164 | || ||| || | ||| || ||| || || |||| |||||| Sbjct 3183 AGCCATGCCTTCCGACAAAGCAAATTTGTATACACAAAATATACCCGCTGAACCCATCAG 3124 Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 3123 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCGAAC 3064 Query 225 TTCC 228 |||| Sbjct 3063 TTCC 3060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751997654230