Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq121 75.2 2e-11 >seq121 Length=12206 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11 CATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGT 70 || |||| |||||| |||||||| ||||| | |||||| || || ||| ||||||||| Sbjct 5473 CAGCACCTGGCAGGAGTCAGTCCTTATACTACCACTTAC-GTGTTTGCAAAGACCTGTGT 5415 Query 71 TTTTAGTAAACAGTCGCT 88 ||||| |||||||| ||| Sbjct 5414 TTTTATTAAACAGTTGCT 5397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694397833906