Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq121 111 4e-22 >seq121 Length=12206 Score = 111 bits (122), Expect = 4e-22 Identities = 196/277 (71%), Gaps = 18/277 (6%) Strand=Plus/Minus Query 8 ACACT-GCATCTTCAC-AGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGC 65 ||||| || ||||||| ||| | | |||||||| ||| | ||||||| | | Sbjct 5661 ACACTCGCTTCTTCACGAGCAAATA-AATTTCACAGAGATTATTCAAGAGACAGTGAAAC 5603 Query 66 CATCGTTACGCCATTCGTGCAGG-TCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 124 || |||| |||||| |||||| || || ||| ||| ||||||||||||||||| Sbjct 5602 AGTCATTACTCCATTCATGCAGGATCATAA-TTAGTGACCAATGAATTTCGCTACCTTAG 5544 Query 125 GACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTA 184 ||| || | ||||| |||||||||||| || ||| | | || ||| || | Sbjct 5543 GACAGTCAGAGTTACTGCCGCCGTTTACTGGTTCTTAGTT-------TT---GTT-GCAA 5495 Query 185 ACCCCATCAA--TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC 242 || | | || |||| | | ||||| |||||| |||| || ||||| |||||| | Sbjct 5494 ACACAACAAAGGTTAAAATAACAGCACCTGGCAGGAGTCAGTCCTTATACTACCACTTAC 5435 Query 243 GTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||||||||| || ||||||||||| |||||||| || Sbjct 5434 GTGTTTGCAAAGACCTGTGTTTTTATTAAACAGTTGC 5398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260795940224