Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq121 125 2e-26 >seq121 Length=12206 Score = 125 bits (138), Expect = 2e-26 Identities = 239/346 (69%), Gaps = 17/346 (5%) Strand=Plus/Minus Query 26 AATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGG-TC 84 |||||||| ||| |||| ||||||||| | || |||| || ||| ||| || || Sbjct 5636 AATTTCACAGAGATTATTCAAGAGACAGTGAAACAGTCATTACTCCATTCATGCAGGATC 5577 Query 85 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTT 144 || ||| ||| |||||||||||||||||||| || | |||||| |||||||||| Sbjct 5576 ATAA-TTAGTGACCAATGAATTTCGCTACCTTAGGACAGTCAGAGTTACTGCCGCCGTTT 5518 Query 145 ACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACC 204 ||||| ||| |||| || | | | | |||| | |||| | ||||||| Sbjct 5517 ACTGGTTCTT-AGTT--TTGTTGCAAACAC---AACAAA---GGTTAAAATAACAGCACC 5467 Query 205 GGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTA 264 |||||| ||||| | ||||| | ||| || || ||| | |||||||||||| || Sbjct 5466 TGGCAGGAGTCAGTCCTTATACTACCACTTACGTGTTTGCAAAGACCTGTGTTTTTATTA 5407 Query 265 AACAGTCGCTTGGGCCTATTCTCTGCGGCCT------GTCATAGACAGGCACCCCTTCTC 318 |||||| ||| || ||| | ||| || | | | | || | |||||||| Sbjct 5406 AACAGTTGCTATTTCCGATTTTTTGCAATCTTTTTTATTAACAAAAAGACTTCCCTTCTC 5347 Query 319 CCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 || ||||||| || || ||||||||||||||| |||| || || Sbjct 5346 CCGAAGTTACAGGAACAATTTGCCGAGTTCCTTTTGAATAATTATC 5301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062396579072