Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq158 288 2e-75 >seq158 Length=6176 Score = 288 bits (318), Expect = 2e-75 Identities = 222/255 (87%), Gaps = 14/255 (5%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3130 CCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 3071 Query 73 CTCAAACTTCCATTGGCTGGAAGCC-AATA-GTCCCTCTAAGAAGCCAGCCACCAACCAT 130 ||| ||||||| || | | || || | ||||||||||||||||| | | || ||| Sbjct 3070 CTCGAACTTCC--TGCTCGTATACCGAACATGTCCCTCTAAGAAGCCA-CAAACA--CAT 3016 Query 131 A-GTCG----ATGG--GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 | |||| | | |||||||||| ||| ||||||||||||||| ||||||||||| Sbjct 3015 ATGTCGCCATACGCCCGGCTATTTAGTAGGCCGAGGTCTCGTTCGTTAACGGAATTAACC 2956 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2955 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 2896 Query 244 AGCTATCAATCTGTC 258 |||| |||||||||| Sbjct 2895 AGCTCTCAATCTGTC 2881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796797514482