Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq158 199 7e-49 >seq158 Length=6176 Score = 199 bits (220), Expect = 7e-49 Identities = 209/275 (76%), Gaps = 16/275 (6%) Strand=Plus/Plus Query 70 GGCTTCTTAGAGGGAC-TATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| | | | | | | ||||||| |||||||||||||||||| Sbjct 3026 GGCTTCTTAGAGGGACATGTTCGGTATACGAGCAGGAAGTTCGAGGCAATAACAGGTCTG 3085 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| | || || || || Sbjct 3086 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGGGTTCAGCGGGTATAT 3145 Query 189 ----------CA-----CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || ||| | ||||||| ||| ||||| | | || | ||||| Sbjct 3146 TTTGTGTATACAAATTTGCTTTGTCGGAAGGCATGGCTAATCCTTTGAACGCCCATCGTG 3205 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 |||||| |||| ||||||||||| ||| ||||||||||| |||||||| ||| ||| Sbjct 3206 CTGGGGCTAGATTTTTGCAATTATTAATCTCCAACGAGGAATTCCTAGTAAACGCAAGTC 3265 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| || |||| ||||||||||||||||||| Sbjct 3266 ATCAGCTTGCATTGAATACGTCCCTGCCCTTTGTA 3300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947196950016