Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq158 325 1e-86 >seq158 Length=6176 Score = 325 bits (360), Expect = 1e-86 Identities = 380/505 (75%), Gaps = 26/505 (5%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||| |||||| | || | |||| | || ||||| | ||||||||||| Sbjct 2179 CTCATTCCAATAGCAAGACGCGAA-GCGCCCCGCATTGATATTTCTCGTCACTACCTCGT 2121 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 2120 GGAGTCCACATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTCTCT 2061 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATAC-CATGGTAGG 182 ||||||||||||||||| |||| |||||| ||||||| ||||||| ||| || ||||| Sbjct 2060 CAGGCTCCCTCTCCGGAGTCGAGCCCTAACTCCCCGTCACCCGTT-ATAGTCACCGTAGG 2002 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 ||| || |||||| |||| | |||| ||||||||| | || || |||||| | | Sbjct 2001 CCAATACCCTACCGTCGACAACTGATGGGGCAGAAACTCAAACGATTCATCGCT--CCGA 1944 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTT 302 | | ||||| | | | |||| |||| |||||||| | ||||| || Sbjct 1943 A----AAGCGATCTGCTCAATTATCATGACTCACCAAGA-----------GAGTTGGCTT 1899 Query 303 TTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTTT-AGCATGTATTAGCTCTA 359 | ||||||| | | |||| || |||||||| | |||| |||||| || | Sbjct 1898 AG-ACCTAATAAGTGCGGCCCTCCCCGAAAGTCGGGCCCGTACAGCACGTATTAATTCCA 1840 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||| | | ||||| | || |||| |||| | || | ||||||||| ||||| Sbjct 1839 GAATTACTGCAGGTATCCGTATA--AAGGAACTACCGAAGGGATTATAACTGATATAATG 1782 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||| ||||||||||||| ||||| | ||||||||||| |||||||||||||| ||||| Sbjct 1781 AGCCGTTCGCAGTTTCACAGTATAATTCGCTTATACTTACACATGCATGGCTTAGTCTTT 1722 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||| ||| || | |||||||||| Sbjct 1721 GAGACGAGCGTAGGGCTACTGGCAG 1697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510395136512