Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq61 224 8e-54 seq30 194 1e-44 >seq61 Length=193651 Score = 224 bits (248), Expect = 8e-54 Identities = 633/961 (66%), Gaps = 26/961 (3%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||||||| ||||| | || || |||||||| ||||| | ||| || || || || Sbjct 58587 ACAAACTTGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTG 58528 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||| || || ||||| || || | | ||| |||| | |||| || || Sbjct 58527 TACTCGATGATCTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTC 58468 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||||| |||||||| |||||| | | ||| | || || ||||| | ||| | Sbjct 58467 GACTTGCGGTTGCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAG 58408 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA---CGTACCGC--CCTACCTT 66227 | || || ||| || | | || || ||| || ||||| || |||| Sbjct 58407 CTGAGAATCTGGTACCAGAGGTCCTGGGCGCGCATCGTCTTGCG-ACCGCGACCCTCCTT 58349 Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA-T 66286 ||||| | |||||||| | | ||| || || | || || || || | | Sbjct 58348 C----TCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCT 58293 Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC-----A 66341 | | || || || || | |||| ||| | |||||| | |||||| | Sbjct 58292 TGGC-CTCGTTCGGGCAAAAGAGCGTCCAGG-----TGCTGTTCGCCTCGACGCGCTCCA 58239 Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401 | || || ||||| | |||||| ||||| ||||| ||||| || || | |||||| | | Sbjct 58238 TGAAAAGGTCAGGGACCCAGAGCGCGTAAAAGAGGTCGCGCGCGCGGTTCTCCTCCTTAC 58179 Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 |||| || ||||| | || | || || || |||||||||||| || || ||||| | Sbjct 58178 CGTGGTTCTTGCGGAGCTCAATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACA 58119 Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521 |||| || |||||| | || |||||||| || ||||| |||||||| || | ||||| Sbjct 58118 TGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGA 58059 Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581 |||| |||| ||| || |||| ||||| || ||||| ||||||||| | | | | || Sbjct 58058 AGACGCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTTGGTGCCGGCCACGTAGCTTC 57999 Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641 | || || || | ||| | || | |||||| || ||||| ||| |||||| | Sbjct 57998 CCGAAGCGCGAATGTTGTGGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCG 57939 Query 66642 CACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGT 66701 | || | | ||| |||| ||||| ||||| ||||| |||| ||| || |||| Sbjct 57938 CGCACGTCTCGAGCGTCTGGAAGATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGA 57879 Query 66702 AGCATGAACTA-AGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGC 66760 |||| | | | | || || || || |||| |||||| ||||| || |||||| Sbjct 57878 AGCA-GCTCGACATCTGCGGGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGC 57820 Query 66761 GTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCA 66820 |||||| | | | ||||| ||||| ||||| ||| || ||||||| ||| Sbjct 57819 GTAAAGAACTTTTGCGACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTG 57760 Query 66821 TGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTT 66879 || || || | | ||| ||||| || | | || || || ||| | | | || || Sbjct 57759 TGGATACCCACAGAGACA-CGCATGAGCATCTGCTGGGGGCGCTCGGCAATCTTGTCGTT 57701 Query 66880 GATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || | | | ||| ||||| || || ||||||| |||||||| ||| | ||| || Sbjct 57700 GACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTC 57641 Query 66940 G 66940 | Sbjct 57640 G 57640 >seq30 Length=443502 Score = 194 bits (214), Expect = 1e-44 Identities = 581/879 (66%), Gaps = 31/879 (4%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| || | ||||||| ||| | |||||| ||||| || || || |||| Sbjct 288943 TGTTCCCTATCCAGCACCAGGATATCTGGGACGCGTACAAGAAGGCCGAGGCCTCGTTCT 288884 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGC 61182 |||||| ||||||||||| || | | || | |||| || || | | | || Sbjct 288883 GGACGGCTGAGGAGGTCGACCTGGGCCAGGATCAGCGCGACTTTGACTCGATGACCAAG- 288825 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || || || || | || || ||| ||||||||||||| | |||||||| |||||| Sbjct 288824 GGCGAGCAGCACTTTGTCAAGCACGTGCTGGCGTTCTTTGCTTCCTCGGACGGCATCGTC 288765 Query 61243 AATGAGAATTTATTGGA--ACGTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 ||||| | |||| || ||| | || |||||| ||| |||||||||| || Sbjct 288764 CTCGAGAACGTGGTGGAGAACTTTT---GTAGTGAGGTGAGTGTGCCGGAGGCGCGCTGC 288708 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 || |||||||||||||| ||||| ||||| | || | ||| ||||| | |||||| Sbjct 288707 TTTTACGGCTTCCAGATGGCCATCGAGAACATTCATGCCGAGGTGTACTCGCTGCTCATC 288648 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 || || ||||| | || || | || | | | ||||||||| | ||| | Sbjct 288647 GACACCTACATTCGCGACCGCACCGAGAAGCACAGTCTTTTCAATGCCCTTACGACTTTG 288588 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGC------CTTCAATTGGATCACCAGTACAACG 61473 ||| ||| | ||| ||| | ||||| || || |||| | || ||| Sbjct 288587 CCGTGCGTGCGGGAGAAGGCGCAGTGGGCGATGCGCTACA--TGGA-CGGCA--ACATTT 288533 Query 61474 GCTACATTTGGTGAACG-ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG 61532 || || |||| ||| || ||| |||| ||||| | || || || | || || ||| Sbjct 288532 GC-ACCTTTGCTGAGCGCCTTGTTGGC-TTTGCCGCCGTGGAAGGCATCTTCTTTTCTGG 288475 Query 61533 ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAG 61592 || || ||| ||||||||| | ||||| || || || ||||| || || ||||| Sbjct 288474 CTCTTTCTGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTC 288415 Query 61593 CAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAA 61652 ||| ||| | || ||||||||||||||||| ||| |||||| | || ||| Sbjct 288414 CAACGAGCTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGCTTGCCTCCTCTTC-- 288357 Query 61653 ACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG-AGGCGG 61711 ||| | || | | || ||||||| || ||| | |||| | ||| | ||| | Sbjct 288356 -CGCAAGCTCCGCCACCCGCCCTCGGAGGCCCGCGTGCGCGAGA-TCATCGAGTCGGCCG 288299 Query 61712 TAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATT 61771 | || || || || | | ||||| | |||||| || ||||||||||| | Sbjct 288298 TCGACATTGAGTGCGAGTTCATCTCCGACGCGCTCCCCGTCGAGCTTATCGGCATGAACT 288239 Query 61772 GTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT--GGTCGATTTGGG 61829 | || ||| |||||| || | ||||| || ||||||||| | |||| | || Sbjct 288238 CTACCCTCATGCAGCAGTACATCAAGTTTGTGGCTGACCGTCTGGTCAAGTCG--CTCGG 288181 Query 61830 TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGA 61889 | ||| || || | ||||||| ||||| | |||||| | || ||| || | Sbjct 288180 CTTTAAGGCCATTTACGGCGTGCAAAACCCCTTTGACTGGATGGACCTCATCTCGATGCA 288121 Query 61890 TGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 |||||||| || ||||| || || || || ||||| || Sbjct 288120 GGGCAAGACCAACTTTTTTGAAAAGCGCGTTGGCGAGTA 288082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566439794080