Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq61 224 8e-54
seq30 194 1e-44
>seq61
Length=193651
Score = 224 bits (248), Expect = 8e-54
Identities = 633/961 (66%), Gaps = 26/961 (3%)
Strand=Plus/Minus
Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052
||||||||| ||||| | || || |||||||| ||||| | ||| || || || ||
Sbjct 58587 ACAAACTTGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTG 58528
Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112
||||||| || || ||||| || || | | ||| |||| | |||| || ||
Sbjct 58527 TACTCGATGATCTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTC 58468
Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172
|||||| |||||||| |||||| | | ||| | || || ||||| | ||| |
Sbjct 58467 GACTTGCGGTTGCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAG 58408
Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA---CGTACCGC--CCTACCTT 66227
| || || ||| || | | || || ||| || ||||| || ||||
Sbjct 58407 CTGAGAATCTGGTACCAGAGGTCCTGGGCGCGCATCGTCTTGCG-ACCGCGACCCTCCTT 58349
Query 66228 TGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACA-T 66286
||||| | |||||||| | | ||| || || | || || || || | |
Sbjct 58348 C----TCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCT 58293
Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC-----A 66341
| | || || || || | |||| ||| | |||||| | |||||| |
Sbjct 58292 TGGC-CTCGTTCGGGCAAAAGAGCGTCCAGG-----TGCTGTTCGCCTCGACGCGCTCCA 58239
Query 66342 TAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGC 66401
| || || ||||| | |||||| ||||| ||||| ||||| || || | |||||| | |
Sbjct 58238 TGAAAAGGTCAGGGACCCAGAGCGCGTAAAAGAGGTCGCGCGCGCGGTTCTCCTCCTTAC 58179
Query 66402 CGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461
|||| || ||||| | || | || || || |||||||||||| || || ||||| |
Sbjct 58178 CGTGGTTCTTGCGGAGCTCAATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACA 58119
Query 66462 TGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGA 66521
|||| || |||||| | || |||||||| || ||||| |||||||| || | |||||
Sbjct 58118 TGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGA 58059
Query 66522 AGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATC 66581
|||| |||| ||| || |||| ||||| || ||||| ||||||||| | | | | ||
Sbjct 58058 AGACGCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTTGGTGCCGGCCACGTAGCTTC 57999
Query 66582 CTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAG 66641
| || || || | ||| | || | |||||| || ||||| ||| |||||| |
Sbjct 57998 CCGAAGCGCGAATGTTGTGGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCG 57939
Query 66642 CACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGT 66701
| || | | ||| |||| ||||| ||||| ||||| |||| ||| || ||||
Sbjct 57938 CGCACGTCTCGAGCGTCTGGAAGATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGA 57879
Query 66702 AGCATGAACTA-AGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGC 66760
|||| | | | | || || || || |||| |||||| ||||| || ||||||
Sbjct 57878 AGCA-GCTCGACATCTGCGGGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGC 57820
Query 66761 GTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCA 66820
|||||| | | | ||||| ||||| ||||| ||| || ||||||| |||
Sbjct 57819 GTAAAGAACTTTTGCGACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTG 57760
Query 66821 TGAATCCCGAGTG-CACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTT 66879
|| || || | | ||| ||||| || | | || || || ||| | | | || ||
Sbjct 57759 TGGATACCCACAGAGACA-CGCATGAGCATCTGCTGGGGGCGCTCGGCAATCTTGTCGTT 57701
Query 66880 GATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939
|| | | | ||| ||||| || || ||||||| |||||||| ||| | ||| ||
Sbjct 57700 GACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTC 57641
Query 66940 G 66940
|
Sbjct 57640 G 57640
>seq30
Length=443502
Score = 194 bits (214), Expect = 1e-44
Identities = 581/879 (66%), Gaps = 31/879 (4%)
Strand=Plus/Minus
Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123
||||||| ||| || | ||||||| ||| | |||||| ||||| || || || ||||
Sbjct 288943 TGTTCCCTATCCAGCACCAGGATATCTGGGACGCGTACAAGAAGGCCGAGGCCTCGTTCT 288884
Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGC 61182
|||||| ||||||||||| || | | || | |||| || || | | | ||
Sbjct 288883 GGACGGCTGAGGAGGTCGACCTGGGCCAGGATCAGCGCGACTTTGACTCGATGACCAAG- 288825
Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242
|| || || || || | || || ||| ||||||||||||| | |||||||| ||||||
Sbjct 288824 GGCGAGCAGCACTTTGTCAAGCACGTGCTGGCGTTCTTTGCTTCCTCGGACGGCATCGTC 288765
Query 61243 AATGAGAATTTATTGGA--ACGTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGT 61299
||||| | |||| || ||| | || |||||| ||| |||||||||| ||
Sbjct 288764 CTCGAGAACGTGGTGGAGAACTTTT---GTAGTGAGGTGAGTGTGCCGGAGGCGCGCTGC 288708
Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359
|| |||||||||||||| ||||| ||||| | || | ||| ||||| | ||||||
Sbjct 288707 TTTTACGGCTTCCAGATGGCCATCGAGAACATTCATGCCGAGGTGTACTCGCTGCTCATC 288648
Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419
|| || ||||| | || || | || | | | ||||||||| | ||| |
Sbjct 288647 GACACCTACATTCGCGACCGCACCGAGAAGCACAGTCTTTTCAATGCCCTTACGACTTTG 288588
Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGC------CTTCAATTGGATCACCAGTACAACG 61473
||| ||| | ||| ||| | ||||| || || |||| | || |||
Sbjct 288587 CCGTGCGTGCGGGAGAAGGCGCAGTGGGCGATGCGCTACA--TGGA-CGGCA--ACATTT 288533
Query 61474 GCTACATTTGGTGAACG-ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG 61532
|| || |||| ||| || ||| |||| ||||| | || || || | || || |||
Sbjct 288532 GC-ACCTTTGCTGAGCGCCTTGTTGGC-TTTGCCGCCGTGGAAGGCATCTTCTTTTCTGG 288475
Query 61533 ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAG 61592
|| || ||| ||||||||| | ||||| || || || ||||| || || |||||
Sbjct 288474 CTCTTTCTGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTC 288415
Query 61593 CAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAA 61652
||| ||| | || ||||||||||||||||| ||| |||||| | || |||
Sbjct 288414 CAACGAGCTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGCTTGCCTCCTCTTC-- 288357
Query 61653 ACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG-AGGCGG 61711
||| | || | | || ||||||| || ||| | |||| | ||| | ||| |
Sbjct 288356 -CGCAAGCTCCGCCACCCGCCCTCGGAGGCCCGCGTGCGCGAGA-TCATCGAGTCGGCCG 288299
Query 61712 TAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATT 61771
| || || || || | | ||||| | |||||| || ||||||||||| |
Sbjct 288298 TCGACATTGAGTGCGAGTTCATCTCCGACGCGCTCCCCGTCGAGCTTATCGGCATGAACT 288239
Query 61772 GTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT--GGTCGATTTGGG 61829
| || ||| |||||| || | ||||| || ||||||||| | |||| | ||
Sbjct 288238 CTACCCTCATGCAGCAGTACATCAAGTTTGTGGCTGACCGTCTGGTCAAGTCG--CTCGG 288181
Query 61830 TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGA 61889
| ||| || || | ||||||| ||||| | |||||| | || ||| || |
Sbjct 288180 CTTTAAGGCCATTTACGGCGTGCAAAACCCCTTTGACTGGATGGACCTCATCTCGATGCA 288121
Query 61890 TGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928
|||||||| || ||||| || || || || ||||| ||
Sbjct 288120 GGGCAAGACCAACTTTTTTGAAAAGCGCGTTGGCGAGTA 288082
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397566439794080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |