Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq70 91.5 6e-13
seq29 86.0 3e-11
>seq70
Length=172613
Score = 91.5 bits (100), Expect = 6e-13
Identities = 155/219 (71%), Gaps = 13/219 (6%)
Strand=Plus/Plus
Query 222465 CATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATG-- 222522
||| ||||| |||||||||||| || | ||| ||||||||| | | || | |||
Sbjct 143084 CATTATCCAGCGCGACCTCAAGGCCCGAAACGTGCTCGTGGATATC-CACTTTA-ATGCC 143141
Query 222523 AAGGTGGCCGACTTTGGG--TTCGCGCG----GATCAAGGAAACCAACGCCACCATGACA 222576
|||||||| |||||||| ||||||| || | |||| | |||| ||||||
Sbjct 143142 AAGGTGGCAGACTTTGGTCTTTCGCGCTTGAAGACCGAGGA---CGACGCTGGCATGACG 143198
Query 222577 CGGTGCGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAG 222636
|| || |||||| ||||| || || ||||| ||| | |||| ||| |||
Sbjct 143199 GCCTGTGGTACGCCGGCATGGACTGCGCCGGAGATTGTCAAACTCGAGCAGTACGACGAA 143258
Query 222637 AAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAG 222675
|||| |||||||| ||||| ||||| |||||||||||
Sbjct 143259 AAGGTGGACGTCTATTCGTTTGGCATTGTCATGTGGGAG 143297
>seq29
Length=456269
Score = 86.0 bits (94), Expect = 3e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143
|||||| || | ||||| ||||| |||||||| ||||||| ||| ||||||||||| ||
Sbjct 223988 CTCCTTAAGACGGGGCACACCCAGCGTCACGTTTTTGGCCGAGACACCGGCAAAGTGAAA 224047
Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTG 349185
||| | ||| |||| ||| || ||||| || ||| ||||
Sbjct 224048 GGTGTTGAGCGTCATCTGGGTCGCCGGCTCACCAATGGACTG 224089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084730389370956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |