Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq70 91.5 6e-13 seq29 86.0 3e-11 >seq70 Length=172613 Score = 91.5 bits (100), Expect = 6e-13 Identities = 155/219 (71%), Gaps = 13/219 (6%) Strand=Plus/Plus Query 222465 CATCATCCACCGCGACCTCAAGTCCAGCAACCTGCTCGTGGGCGACTCCCTGTCGATG-- 222522 ||| ||||| |||||||||||| || | ||| ||||||||| | | || | ||| Sbjct 143084 CATTATCCAGCGCGACCTCAAGGCCCGAAACGTGCTCGTGGATATC-CACTTTA-ATGCC 143141 Query 222523 AAGGTGGCCGACTTTGGG--TTCGCGCG----GATCAAGGAAACCAACGCCACCATGACA 222576 |||||||| |||||||| ||||||| || | |||| | |||| |||||| Sbjct 143142 AAGGTGGCAGACTTTGGTCTTTCGCGCTTGAAGACCGAGGA---CGACGCTGGCATGACG 143198 Query 222577 CGGTGCGGCACGCCGTACTGGACGGCACCCGAGATCATCACCCAAGAGCGCTACACCGAG 222636 || || |||||| ||||| || || ||||| ||| | |||| ||| ||| Sbjct 143199 GCCTGTGGTACGCCGGCATGGACTGCGCCGGAGATTGTCAAACTCGAGCAGTACGACGAA 143258 Query 222637 AAGGCCGACGTCTACTCGTTCGGCATCATCATGTGGGAG 222675 |||| |||||||| ||||| ||||| ||||||||||| Sbjct 143259 AAGGTGGACGTCTATTCGTTTGGCATTGTCATGTGGGAG 143297 >seq29 Length=456269 Score = 86.0 bits (94), Expect = 3e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 |||||| || | ||||| ||||| |||||||| ||||||| ||| ||||||||||| || Sbjct 223988 CTCCTTAAGACGGGGCACACCCAGCGTCACGTTTTTGGCCGAGACACCGGCAAAGTGAAA 224047 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTG 349185 ||| | ||| |||| ||| || ||||| || ||| |||| Sbjct 224048 GGTGTTGAGCGTCATCTGGGTCGCCGGCTCACCAATGGACTG 224089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084730389370956