Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq20799 250 4e-64 seq1902 250 4e-64 seq20524 244 2e-62 seq19046 244 2e-62 seq21458 242 6e-62 seq13329 223 5e-56 seq13571 210 3e-52 seq9847 136 6e-30 seq24193 75.2 2e-11 seq6064 75.2 2e-11 >seq20799 Length=16889 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 2391 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 2448 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| ||||||||| | |||||| |||| |||||| Sbjct 2449 CTCGTTCAAGACTGAAAATTGCAACAATCTATCCCAAGCACGATACGCATTCACAAGATT 2508 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| || || ||| |||||| || |||||||||| |||||||||||||||||||| Sbjct 2509 GCCCAGATCTATCGATCAAGGTTGTATACTCGTTGAACGTATCAGTGTAGCGCGCGTGCG 2568 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2569 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 2617 >seq1902 Length=8552 Score = 250 bits (276), Expect = 4e-64 Identities = 195/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 7636 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 7579 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| ||||||||| | |||||| |||| |||||| Sbjct 7578 CTCGTTCAAGACTGAAAATTGCAACAATCTATCCCAAGCACGATACGCATTCACAAGATT 7519 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| || || ||| |||||| || |||||||||| |||||||||||||||||||| Sbjct 7518 GCCCAGATCTATCGATCAAGGTTGTATACTCGTTGAACGTATCAGTGTAGCGCGCGTGCG 7459 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 7458 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 7410 >seq20524 Length=18870 Score = 244 bits (270), Expect = 2e-62 Identities = 194/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| || |||||||||||| | Sbjct 14259 GTACAAAGGGCAGGGACGTAATCAAAGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 14316 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| ||||||||| | |||||| |||| |||||| Sbjct 14317 CTCGTTCAAGACTGAAAATTGCAACAATCTATCCCAAGCACGATACGCATTCACAAGATT 14376 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| || || ||| |||||| || |||||||||| |||||||||||||||||||| Sbjct 14377 GCCCAGATCTATCGATCAAGGTTGTATACTCGTTGAACGTATCAGTGTAGCGCGCGTGCG 14436 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 14437 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 14485 >seq19046 Length=8721 Score = 244 bits (270), Expect = 2e-62 Identities = 194/229 (85%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 7710 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 7653 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| ||||||||| | ||||| |||| |||||| Sbjct 7652 CTCGTTCAAGACTGAAAATTGCAACAATCTATCCCAAGAACGATACGCATTCACAAGATT 7593 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || || ||| |||||| || |||||||||| |||||||||||||||||||| Sbjct 7592 ACCCAGATCTATCGATCAAGGTTGTATACTCGTTGAACGTATCAGTGTAGCGCGCGTGCG 7533 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 7532 GCCCAGAACATCTAAGGGCATGACAGACCTGTTATTGCCTCCAACTTCC 7484 >seq21458 Length=12273 Score = 242 bits (268), Expect = 6e-62 Identities = 195/230 (85%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 11511 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 11454 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| ||||||||| | ||||| |||| |||||| Sbjct 11453 CTCGTTCAAGACTGAAAATTGCAACAATCTATCCCAAGAACGATACGCATTCACAAGATT 11394 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || || ||| |||||| || |||||||||| |||||||||||||||||||| Sbjct 11393 ACCCAGATCTATCGATCAAGGTTGTATACTCGTTGAACGTATCAGTGTAGCGCGCGTGCG 11334 Query 180 GCCCAGAACATCTAA-GGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 11333 GCCCAGAACATCTAAGGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 11284 >seq13329 Length=2281 Score = 223 bits (246), Expect = 5e-56 Identities = 189/229 (83%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 787 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 844 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| ||||||||| | ||||| |||| |||||| Sbjct 845 CTCGTTCAAGACTGAAAATTGCAACAATCTATCCCAAGAACGATACGCATTCACAAGATT 904 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || || ||| |||||| || |||||||||| ||||||| |||||||| Sbjct 905 ACCCAGATCTATCGATCAAGGTTGTATACTCGTTGAACGTATCAGTG-----CGCGTGCG 959 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 960 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGACTCCAACTTCC 1008 >seq13571 Length=15900 Score = 210 bits (232), Expect = 3e-52 Identities = 186/227 (82%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||||| | |||| ||||||| | |||||||||||| | Sbjct 6371 GTACAAACGGCAGGGACGTAATCAACACAAGCT-GATGACTTGAATTTACTAGGAATT-C 6428 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||| | | | |||| |||| |||||| Sbjct 6429 CTCGTTCAAGACTGAAAATTGCAACATTCTATCTCAAGCTCGATACGCATTCACAAGATT 6488 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || || || |||||| || |||||||||| |||||||||||||||||||| Sbjct 6489 ACCCAGATCTACCGATCAAGGTTGTATACTCGTTGAACGTATCAGTGTAGCGCGCGTGCG 6548 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 6549 -CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTT 6594 >seq9847 Length=66103 Score = 136 bits (150), Expect = 6e-30 Identities = 103/120 (86%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 110 TTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTA 168 |||| |||||||||| | | ||| |||||| ||| |||||||||| ||||||||| Sbjct 40434 TTCACAAGATTACCCATATTTATCGATCAAGGTTATATACTCGTTGAACGTATCAGTGTA 40493 Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| || Sbjct 40494 GCGCGCGTGCGGTCCAGAACATCTAAGAGCATCACAGACCTGTTATTGCCTCCAACTCCC 40553 >seq24193 Length=34247 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/65 (88%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 8 GGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTG 67 ||||||||||||| ||||||| ||| ||||||||||| |||||||||| ||||||||| Sbjct 25052 GGGCAGGGACGTAATCAACGCAAGC-TGATGACTCGCATTTACTAGGAA-TTCCTCGTTC 24995 Query 68 AAGAC 72 || || Sbjct 24994 AAAAC 24990 >seq6064 Length=21581 Score = 75.2 bits (82), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 110 TTCA-AAGATTACCCG-GACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGT 167 |||| |||||||||| || || ||| |||||| || |||||||||| |||||||| Sbjct 17905 TTCACAAGATTACCCCAGATCTATCGATCAAGGTTGTATACTCGTTGAACGTATCAGTGT 17964 Query 168 AGCGCGCGTGCGGCCCAG 185 |||||||||||||||||| Sbjct 17965 AGCGCGCGTGCGGCCCAG 17982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751804863990