Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq24114 102 5e-20 seq21458 102 5e-20 seq20799 102 5e-20 seq13329 102 5e-20 seq20524 100 2e-19 seq19046 98.7 6e-19 seq1902 98.7 6e-19 seq11245 84.2 1e-14 seq3835 84.2 1e-14 seq24392 75.2 6e-12 >seq24114 Length=32171 Score = 102 bits (112), Expect = 5e-20 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAA-ATGATAACATCGCC 59 ||||||||||||||||||||||| || ||||| || |||| || | ||| | | Sbjct 11203 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTATTA-AACGACTGC 11261 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||| ||||||||||||||| ||||| |||||||| ||||||| ||| ||||||| Sbjct 11262 CAATCCCGAGTCGGCATAGTTTATGGTTAGGACTACGATGGTATCTAATCATCTTCGA 11319 >seq21458 Length=12273 Score = 102 bits (112), Expect = 5e-20 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAA-ATGATAACATCGCC 59 ||||||||||||||||||||||| || ||||| || |||| || | ||| | | Sbjct 10974 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTATTA-AACGACTGC 10916 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||| ||||||||||||||| ||||| |||||||| ||||||| ||| ||||||| Sbjct 10915 CAATCCCGAGTCGGCATAGTTTATGGTTAGGACTACGATGGTATCTAATCATCTTCGA 10858 >seq20799 Length=16889 Score = 102 bits (112), Expect = 5e-20 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAA-ATGATAACATCGCC 59 ||||||||||||||||||||||| || ||||| || |||| || | ||| | | Sbjct 2927 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTATTA-AACGACTGC 2985 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||| ||||||||||||||| ||||| |||||||| ||||||| ||| ||||||| Sbjct 2986 CAATCCCGAGTCGGCATAGTTTATGGTTAGGACTACGATGGTATCTAATCATCTTCGA 3043 >seq13329 Length=2281 Score = 102 bits (112), Expect = 5e-20 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAA-ATGATAACATCGCC 59 ||||||||||||||||||||||| || ||||| || |||| || | ||| | | Sbjct 1317 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTATTA-AACGACTGC 1375 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||| ||||||||||||||| ||||| |||||||| ||||||| ||| ||||||| Sbjct 1376 CAATCCCGAGTCGGCATAGTTTATGGTTAGGACTACGATGGTATCTAATCATCTTCGA 1433 >seq20524 Length=18870 Score = 100 bits (110), Expect = 2e-19 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAA-ATGATAACATCGCC 59 ||||||||||||||||||||||| || ||||| || |||| || | ||| | | Sbjct 14795 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTATTA-AACGACTGC 14853 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 | ||||| ||||||||||||||| ||||| |||||||| ||||||| ||| |||||| Sbjct 14854 CAATCCCGAGTCGGCATAGTTTATGGTTAGGACTACGATGGTATCTAATCATCTTCG 14910 >seq19046 Length=8721 Score = 98.7 bits (108), Expect = 6e-19 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAA-ATGATAACATCGCC 59 ||||||||||||||||||||||| || ||||| || |||| || | ||| | | Sbjct 7174 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTATTA-AACGACTGC 7116 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| | ||||||||||||||| ||||| |||||||| ||||||| ||| ||||||| Sbjct 7115 CAATCACGAGTCGGCATAGTTTATGGTTAGGACTACGATGGTATCTAATCATCTTCGA 7058 >seq1902 Length=8552 Score = 98.7 bits (108), Expect = 6e-19 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAA-ATGATAACATCGCC 59 ||||||||||||||| ||||||| || ||||| || |||| || | ||| | | Sbjct 7100 GAACCCAAAGACTTTTATTTCTCATACGGTGCTGACAAGGTCATTTATTA-AACGACTGC 7042 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||| ||||||||||||||| ||||| |||||||| ||||||| ||| ||||||| Sbjct 7041 CAATCCCGAGTCGGCATAGTTTATGGTTAGGACTACGATGGTATCTAATCATCTTCGA 6984 >seq11245 Length=13484 Score = 84.2 bits (92), Expect = 1e-14 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTC-AAAATGATAACATCGCC 59 ||||||||||||||||||||||| || ||||| || ||| || | ||| | | Sbjct 5476 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCGTTTATTA-AACGACTGC 5534 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||| | ||| ||||||||| |||| |||||||| ||||||| ||| ||||||| Sbjct 5535 CAATCCCGAATCGACATAGTTTATGGTTGGGACTACGATGGTATCTAATCATCTTCGA 5592 >seq3835 Length=21566 Score = 84.2 bits (92), Expect = 1e-14 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTC-AAAATGATAACATCGCC 59 ||||||||||||||||||||||| || ||||| || ||| || | ||| | | Sbjct 15548 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCGTTTATTA-AACGACTGC 15490 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||| | ||| ||||||||| |||| |||||||| ||||||| ||| ||||||| Sbjct 15489 CAATCCCGAATCGACATAGTTTATGGTTGGGACTACGATGGTATCTAATCATCTTCGA 15432 >seq24392 Length=19904 Score = 75.2 bits (82), Expect = 6e-12 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| ||||| |||||||| ||||||| ||| ||||||| Sbjct 5357 CCAATCCCGAGTCGGCATAGTTTATGGTTAGGACTACGATGGTATCTAATCATCTTCGA 5299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278330088540