Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15263 282 3e-71 seq24131 201 9e-47 >seq15263 Length=38747 Score = 282 bits (312), Expect = 3e-71 Identities = 761/1143 (67%), Gaps = 41/1143 (4%) Strand=Plus/Plus Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 |||||||||| || || || || || || |||||||| ||||||| |||||| Sbjct 34010 AACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGACGTATACGGTTCAATCGATTCA 34069 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 ||||||| ||||| || || || || || ||||||||||| || || | ||| ||||| Sbjct 34070 TTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCATGGGCGCCACGAGCAACGAGTTG 34129 Query 65555 CGCAATCCGTTCATT-TCAATGTTGTGACG-CAATTCGTCCCAGTTCCACATCGGTTTAT 65612 || | |||| | | ||| ||| | |||| || ||| | ||||| | | Sbjct 34130 CGAATCCCGTACTTGATCACC--TGTTCCTTCAATGTGTTCCAATCCCACAA--GCCTGA 34185 Query 65613 CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 | || || ||| ||||| ||| || | | | || |||| || || || || Sbjct 34186 GGACGGTGTC-ACGCCCCACAAATCAAACTGGAAGATCCCTTTACTCGCAGGGGAGCCT- 34243 Query 65673 GGAAAC-TATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG-GTCTCGAGTGCGGC 65730 | |||| | |||||| |||| || ||||||| | || | ||||| | || || Sbjct 34244 GCAAACGTCTCGTACGGTCCCAGTTCTTTGGCAATCTC-CATCGACGTCTCCATGGCAGC 34302 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGA-TTAAGTTCACGTGCCTCATCGCTCTCGTACG 65789 |||||| ||||| || || || | || || | ||| || || || |||||||| | | Sbjct 34303 AAAATAGATGGTTTCAAAGAT-CTTCTTGTTCAATTCCCGCGCTTCGTCGCTCTCAAATG 34361 Query 65790 GCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849 | | ||| |||| ||| | ||||| || || || || || || || || ||||||| Sbjct 34362 GATAATTCATGAGGATAAACGCATCGGCAAGGCCCTGGACCCCGATCCCAATCGGACGAT 34421 Query 65850 GACGCAAATTGGAACGT-CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 | |||| |||||| ||| | || || ||| ||||| ||||||| ||| || | Sbjct 34422 GCCGCATATTGGA-CGTACGTGCTTCCTTTACGGGGTAATAATTGACATCAATCACCTTG 34480 Query 65909 TTCAAATTGCGTGTCACCACATGCACGATACGTCG--CAATTGTTCGAAATCAAAATGTT 65966 || | || || ||||| || | | |||||| ||||| || |||| || Sbjct 34481 TTTAGGTTTCGCGTCACGACTTTG--GTCACGTCGTACAATTTTTGAAAATTGAAC---- 34534 Query 65967 TAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGC 66026 | ||| ||| ||||||| || || | || | ||||||||||| | Sbjct 34535 --GCACGGTCGT------------CCACAAATTTCGGTAACGCCACCGATGCGAGGTTAC 34580 Query 66027 AGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGC 66086 | || || | || || || | || ||||| | | ||| ||||| ||||| | | Sbjct 34581 ACACGGCCACTTCATCGGGCGACGTGTACTCAATCACTTCACAGCACAAGTTACTCGATC 34640 Query 66087 GTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGT 66146 | || ||||| | |||||||||||| ||||||||| || |||||||||| |||| Sbjct 34641 GAATCGTGCCGAGATTCTGTTGATTCGACTTGCGATTCGCCGCGTCCTTGTACAGCATGA 34700 Query 66147 ACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCA 66206 |||| ||| ||||||| |||| || | |||||| ||| | | || |||| Sbjct 34701 ACGGCACGCCCGTCTCAATCTGGGCGTCCAAGATGGCAAACCACAATTGTTGGGCTTTCA 34760 Query 66207 CCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCA 66265 || | | | ||| | || | | ||||||| ||| |||| | || ||| || | Sbjct 34761 TGGT-CTTCCGCGCGCGTCCATCGTGTTCGTACTGTGCGTACAAGTTTTCAAACTCGGCG 34819 Query 66266 CCCCATACTTCGGACAGACATGGACACTT-GTGTGGACACATCAGCGACCAATCACCATC 66324 ||||| |||| ||| || || | ||| || ||||| | | ||| || |||| Sbjct 34820 CCCCAGCATTCGTACAAACCGGG-CGCTTCGTTCGGACAGAATAAACTCCACTCTCCATT 34878 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 |||||| || |||||| | |||||| ||||| | ||| || || | ||| ||||| Sbjct 34879 GGCTTCTACGCGCTTCATAAACAAATCAGGAATCCACAAGGCATAAAACAAATCACGTGC 34938 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || || ||| ||||||| ||||| || ||||| | ||||| | | ||||||||| Sbjct 34939 CCGATGTAACTCGTTGCCGTGGTTTTTCCGTAAGTCCAAAAACTCGAGCACGTCGGCATG 34998 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| || |||| ||||||||| |||||||| | ||||| ||||| ||||| || || || Sbjct 34999 CCACGGCTCCAAGTAGATGGCAAACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATA 35058 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 || || || || ||||| |||||||| || | || ||| || || ||| ||||| Sbjct 35059 CCGTGCCGTATCATTAAAGACGCGCAACATGGGAATGATCCCATTCGAGGAGCCGTTGGT 35118 Query 66565 GCC 66567 ||| Sbjct 35119 GCC 35121 >seq24131 Length=32940 Score = 201 bits (222), Expect = 9e-47 Identities = 594/904 (66%), Gaps = 35/904 (4%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| || || || | || ||||| || | | || | |||| |||||| Sbjct 30401 GAGAATCCCAACCGCTTTGTGCTCTTTCCCATTCAGGAGCACGAAGTGTGGCAGATGTAC 30460 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || || || || ||||| |||||||||| |||||| | |||||| | ||| | || Sbjct 30461 AAGAAAGCTGAGGCTTCGTTCTGGACGGCCGAGGAGTTGGATTTGGTACATGACCTTAAG 30520 Query 61162 GACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTT 61221 ||||||| | | | || | ||| | || || || |||||||| | || |||||| Sbjct 30521 GACTGGGTGAATCTTACGGACAATGAGCGTCACTTTATCAAACATGTACTTGCCTTCTTT 30580 Query 61222 GCCGCTTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGT 61277 || || || || || || |||||||| | || |||| ||| | || || Sbjct 30581 GCAGCGAGCGATGGCATTGTGAATGAGAACCTGGCCAT--GAAC--TTCAGCAACGAAGT 30636 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 ||| | | || || ||||| || ||||||||||||||||| || |||||| | ||||| Sbjct 30637 TCAAATACCTGAAGCTCGTTGCTTTTACGGCTTCCAGATTGCGATTGAGAATATTCACTC 30696 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCG---GGCGGAACGTGAACG 61394 || | ||| | ||||| |||||||| || | ||| || | || ||| Sbjct 30697 CGAAGTTTACTCGCTGCTCATTGATACGTATATTAAGGATGTTATGGAGAAA----AACC 30752 Query 61395 AT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | | || ||||||||| || || | || || |||||| | ||||| | | Sbjct 30753 ACCTCTTACGTGCCATCGAAACCATTTCATGTGTCAAAAAGAAAGCCAACTGGGCACTGA 30812 Query 61454 ATTGG----ATCACCAGTACAACGGC-TACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 | ||| ||| | || | || | ||| | || || || | |||||||| Sbjct 30813 AATGGTGTGATCCGC-GTGTATCGTCGTAC----GCGGAGCGCCTGTTAGCATTTGCCTC 30867 Query 61509 GGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 || || || | |||||| || || ||| | ||||||||| | || || || || Sbjct 30868 AGTTGAAGGCATTTTTTTCTCAGGTTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGG 30927 Query 61569 ACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTG 61628 || ||||| || |||| ||| |||||||| || || ||||| || ||||| Sbjct 30928 GCTCATGCCTGGACTGAGTTTCTCGAATGAGTTAATCAGTCGTGACGAAGGTATGCACAC 30987 Query 61629 TGATTTTGC-TGTTT--TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCG 61685 || ||||| ||| | || || || || ||||| || | | | ||| || Sbjct 30988 AGACTTTGCATGTCTCATG-TACTCGAAA-----CTGGTCAACAAGCTGCCAGAGAGCCG 31041 Query 61686 TGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTT 61745 |||| |||||| |||||||||| || | ||||| || |||||| || ||| | | Sbjct 31042 TGTGCACGAGATTATTCGTGAGGCTGTGAAGATCGAGCACGAATTTGTGCGTGATTCCCT 31101 Query 61746 GCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGC 61805 || || ||| ||||||||||| | | || |||| ||||| ||||| |||||||| Sbjct 31102 TCCTGTTGAACTGATCGGCATGAACTCCGCGCTCATGTGCCAGTACATTGAGTTTGTTGC 31161 Query 61806 CGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 |||||| | | | | ||||| || ||| ||| | | || |||||||| || Sbjct 31162 TGACCGTTTACTCTACTCTCTGGGTGTGTCCAAGATTTATCACGCAAAGAACCCATTCGA 31221 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||||||||| ||||| | ||||| || || |||||||| || ||||| || || Sbjct 31222 TTGGATGGACATGATCTCGCTCCAGGGCAAAACCAACTTTTTCGAAAAGCGTGTGGGTGA 31281 Query 61926 CTAT 61929 ||| Sbjct 31282 ATAT 31285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397438212187040