Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq769 178 1e-39 seq8698 159 3e-34 >seq769 Length=28997 Score = 178 bits (196), Expect = 1e-39 Identities = 415/619 (67%), Gaps = 14/619 (2%) Strand=Plus/Minus Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 |||||| | ||| || ||||| || || ||||| || ||||| |||| || || ||||| Sbjct 13009 AGATGCTAAGTTACAAACAGCAATTTCATCAGGTGCAGTATATTCGATGATCTCAGTGCA 12950 Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132 | |||||| | || || ||||| || |||||||| || ||||| |||||||| Sbjct 12949 TAAATTACTACTTTTAATCGTTCCCAAGTTTTGTTGATTGGATTTACGATTACATGCATC 12890 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 ||||||| |||||| || || || || |||||||| |||||||| ||| | Sbjct 12889 TTTGTACAACATGTATGGCGTACCTGTTTCAACTTGACTTTCAATGATTTTAAACCATAA 12830 Query 66193 AGCGCGTGCCTTCACCGTAC-GTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGT 66251 | |||| || || | ||| | || | |||| ||| || || | ||| | Sbjct 12829 TTCTTGTGCACGTACGGTTCTGTAAC-CCTTGCCTTCTTTTTCATATTGATGGTACAATG 12771 Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTG-----TGTGGACACAT 66306 |||||| |||||||| | || | | || ||| || | ||| || | Sbjct 12770 CTTCGAATTTCTCACCCCA--CGTCTCATGCAAAT---CACGTGCAACATTTGGGCAAAA 12716 Query 66307 CAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGC 66366 || | ||| | ||||| || |||||| ||| |||| ||| || ||||| | || Sbjct 12715 CAATGTCCATTGTCCATCTGCTTGTACACGTTTCATGAATAAATCTGGAATCCACATTGC 12656 Query 66367 GTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAA 66426 ||||| | ||||||||| ||| | ||| || |||||||| | || | || Sbjct 12655 ATAGAACAAATCGCGTGCACGTGCATTTTCATCACCATGATTTTTTTTAAGATCTAAAAA 12596 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 ||| |||| || |||||||||||||||| ||| || || || || || | | ||| || Sbjct 12595 CTCGAAGACATCAGCATGCCATGGTTCCAAGTAAATAGCAAAAGAACCTTTTCTTTTACC 12536 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 |||||||||||| ||||| || ||| || ||||| || | || ||| || || | || Sbjct 12535 GCCACCTTGGTCTACGTAACGTGCGGTATCATTGAATACTCTCAGCATTGGGACAATTCC 12476 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGC-CCGTATATCGTGAACAT 66605 ||| | |||||| || ||| |||| ||| || | || || | ||||||| Sbjct 12475 ATTACTTGAGCCATTTGTACCGCGGATGTAACTTCC-AGTACTACGGATGTTGTGAACAC 12417 Query 66606 TCAGACCAATACCACCGGC 66624 ||| ||||||||||| || Sbjct 12416 TCAATCCAATACCACCAGC 12398 >seq8698 Length=1787 Score = 159 bits (176), Expect = 3e-34 Identities = 575/881 (65%), Gaps = 34/881 (4%) Strand=Plus/Minus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 ||||| || | || | |||||||||| ||||| ||||| || ||||| || |||||| Sbjct 1778 TTCCCAATTCAACATAATGATATTTGGCAAATGTATAAAAAAGCTGAAGCATCTTTCTGG 1719 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGT 61185 || | ||| ||| | || ||| | |||| ||| || ||||| | | ||||| | Sbjct 1718 ACTGCGGAAGAGTTAGACTTGGCACAAGATGCGAAAGATTGGGA---TAAAATGAGCGAT 1662 Query 61186 GAACAACATT---TCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 | ||| || |||||| | || ||||| || || || || || |||||||| || Sbjct 1661 AACGAACGTTACTTCATTAGCAACGTATTGGCATTTTTCGCTGCATCCGACGGTATTGTA 1602 Query 61243 AATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 || || ||||| ||| |||| |||| | || ||||||||| | || || ||||||| Sbjct 1601 AACGAAAATTTGTTGATGAACTTTTCCAAC--GAAGTGCAAGTGCCTGAAGCACGTTGTT 1544 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA--CAGTGTTCTCAT 61358 |||| ||||| || || || || || ||| | || | || |||| | ||| | || Sbjct 1543 TCTATGGCTTTCAAATCGCTATCGAAAATATTCATGCAGAAGTGTATTCCTTGT--TAAT 1486 Query 61359 CGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGAT 61418 || || ||||| | | | | ||| || ||||| ||||| || || || || Sbjct 1485 AGACACTTACATTCGTAATGGTCCAGAAAAAACGCGTTTGTTGAATGCTATTGATACAAT 1426 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCA--CCAGTACAACGGCT 61476 || || || ||||| || ||| ||| ||||| || ||| ||||| || Sbjct 1425 CGATGCCGTCAAAGAAAAAGCAGAATGGTGCTTGCGTTGGACCAACGCAG-ACAAC-GCA 1368 Query 61477 ACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCG 61536 | || | || || | | ||||| || | | || ||| | || |||||||| || Sbjct 1367 TCGTTCGCAGAGCGCGTCGTTGCATTCGCTGCGTGTGAAGGTATCTTCTTCAGTGGTTCC 1308 Query 61537 TT---TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGG--TCTGACCTTCA 61591 || ||||| | |||||||| || |||||||| | ||||| || | || |||| Sbjct 1307 TTCTGTGCCG---TGTTTTGGTTAAAAAAACGTGGTATGATGCCAGGTTTATGTTTTTCA 1251 Query 61592 GCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCA 61651 || || ||||| ||||| || || || ||||||||||||| || || ||| || Sbjct 1250 --AACGAATTGATTTCACGTGATGAAGGTTTGCATTGTGATTTCGCATGCTTATTATACA 1193 Query 61652 AACGCTATCTGGTGAATCGTCCGTCGGAGG-AGCGTGTGGGTGAGATTGTTCGTGAGGCG 61710 || || | || |||||| | |||| | || | | | || | | | ||| Sbjct 1192 AAGATCATTTAGTAAATCGTTTACCAGAGGAAACGATTCATTCA-ATCATCGGCAATGCG 1134 Query 61711 GTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAAT 61770 || |||||| | | |||| | | | | || || || | | || |||||||| Sbjct 1133 GTTGAAATCGAAAAAGTATTTGTCTCCCAATCATTACCAGTTGAATTGATTGGCATGAAC 1074 Query 61771 TGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGG- 61828 | | | |||| || || |||||||| || || ||| |||| | ||| || Sbjct 1073 TCAACATTGATGTGCCAATACATTGAATTCTGCGCTGATCGTTTGTTACAAGCATTAGGT 1014 Query 61829 GTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGG 61888 |||| | || || ||| | |||||||| |||| ||||| ||||| || || Sbjct 1013 GTATCTA--AAATGTACAATGCATCCAACCCATTCGATTGGATGGAAATGATCTCCTTGC 956 Query 61889 ATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 | || || || || ||||| || |||||||||||||| ||| Sbjct 955 AAGGTAAAACCAACTTTTTTGAAAAACGTGTAGGCGAATAT 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397523684337440