Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq888 423 2e-113 >seq888 Length=1579 Score = 423 bits (468), Expect = 2e-113 Identities = 507/689 (74%), Gaps = 0/689 (0%) Strand=Plus/Minus Query 161839 ATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCGGTATCCGTCCTTACAAT 161898 || ||||| ||||||||||| |||||| |||| ||| | || ||||| ||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 161899 GCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTG 161958 || ||||| ||||| | |||||||||||| || || || || || || || || || Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 161959 GGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTA 162018 |||||||| |||||||| || || || || || || || | |||||| | || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 162019 CTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCA 162078 |||||| | ||||| |||||||| ||||| ||||| | ||||||||||||||||| || Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 162079 GGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTC 162138 || | | || | || | || | ||| |||||||||| || || |||||||| || Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 162139 TACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAG 162198 | | |||||||||| |||| || ||| || ||| || | || |||| || ||| Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 162199 ACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGT 162258 |||||||| ||||| || || |||||||||||||||||||| |||||| | || || Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 162259 AATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGT 162318 || ||||||||| | || ||||| ||||| ||||| || || | || | |||| Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTCA 1096 Query 162319 TCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAG 162378 | | ||| || ||||| | || ||| || ||||| ||||| || ||||| || ||| Sbjct 1095 GCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGAG 1036 Query 162379 ATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAAT 162438 || ||||| || || |||||||| |||||||| |||||||| |||||||| || | || Sbjct 1035 ATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTAAC 976 Query 162439 GAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCT 162498 |||||| ||||||||||| ||||| | ||||| || ||||| ||| ||||||||||| Sbjct 975 GAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCCT 916 Query 162499 GAGGAAGTTCTGCCTAGAGGTAACGCACT 162527 ||||| || || || | || ||||| || Sbjct 915 GAGGAGGTACTTCCACGTGGAAACGCTCT 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551312963938800