Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq1642 129 8e-25 >seq1642 Length=12514 Score = 129 bits (142), Expect = 8e-25 Identities = 479/747 (64%), Gaps = 29/747 (4%) Strand=Plus/Plus Query 162100 AAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACTTCTC 162159 ||| |||| | || || ||||| || || |||||||| || ||||| || ||| | || Sbjct 1409 AAAATAGCCTTGATAACCGGGATTACCGGCCAAGATGGTTCATACCTTGCAGAATTGCTT 1468 Query 162160 CTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTCTATGATTAACACCCAC 162219 | ||||||| || | ||| ||||| ||||| || || ||||| | |||| || Sbjct 1469 TTAAAGAAAGGTTACAAAGTGCACGGAATTATTCGACGATCTTCTTCGTTTAATACTGGG 1528 Query 162220 AGAATTGACCATATCTTTGA----CCGCA---------TCAC--------TCTCCATTAT 162258 || ||||| || |||| | ||||| || | ||| || ||| Sbjct 1529 AGGATTGAACACATCTACCAAGACCCGCAGGTTGAAAATCGCATGCTATTTCTTCACTAT 1588 Query 162259 GGAGACCTTACCGATGCTTTGAGTATCGTATCTATTATTAAAACAGTTCAACCAGATGAA 162318 || ||| | || ||| | | ||| | ||| | ||| | | ||||| | ||| Sbjct 1589 GGCGACATGACAGATAGTAGTAATATTGCATCACTGATTTCTTCTATCAAACCAAACGAA 1648 Query 162319 ATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTGAATACACA 162378 ||||| || ||| || || |||||||| || ||||| ||||| | | ||||| || Sbjct 1649 ATATACAATTTAGCCGCCCAAAGTCACGTGAAAGTTTCTTTTGAAACGTCAGAATATACC 1708 Query 162379 GCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCG-TCTTCTTGGTAT 162437 | | ||||| | ||||| ||| || | | | || || || ||| | | Sbjct 1709 TCCAACGTGGACGCTCTTGGCACACTACGGCTTTTGAATGCTGTACGATCTGCAAATCTT 1768 Query 162438 GGAA--TCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAG 162495 | || || | | || | || ||||| ||||||||||| | |||| ||||| Sbjct 1769 GAAAGTTCTTGCC---GATTGTATCAAGCATCTACCAGTGAGCTGTTTGGGAAAGTTCGC 1825 Query 162496 GAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAA 162555 || || ||| ||||| || || | |||||||| || || |||| |||||| ||| Sbjct 1826 GAAGTGCCACAGTCGGAAACAACCCCTTTTTATCCACGGTCACCATATGCAGTTGCAAAA 1885 Query 162556 CTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGC 162615 | || || |||||||| | |||||| || ||| || | ||| ||| |||| Sbjct 1886 CAATTTGCATTCTGGATGCTTGTAAACTATAGAGAAGCGTACGGCATGCATCTTTCTAAT 1945 Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 || ||| |||| || || |||||| |||| ||||| | ||||||||||| || || || Sbjct 1946 GGGATTTTATTTAACCATGAAAGCCCACGAAGAGGGGCTACGTTCGTCACGCGAAAAATT 2005 Query 162676 GTCCGAGCCTTGTCCCGAAT-TAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCT 162734 |||| | | |||| | ||| | ||| | | | || || || | Sbjct 2006 ACTAGAGCAGTTGCTAGAATCAAATGT-AATTTGCAAGATACATTGTATCTAGGTAATAT 2064 Query 162735 CAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCT 162794 || | || || ||||| || || ||||| || || || ||||||||| | || || Sbjct 2065 AGATTCGAAGCGAGATTGGGGGCATGCTAAAGATTATGTGGAAGCTATGTGGCTAATTCT 2124 Query 162795 TCAGCAAGAGAAGCCAGATGATTATGT 162821 |||||||| | || ||||||||||| Sbjct 2125 ACAGCAAGATATCCCGGATGATTATGT 2151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691380148926960