Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq2152 394 3e-104 seq4716 205 3e-47 >seq2152 Length=714 Score = 394 bits (436), Expect = 3e-104 Identities = 447/599 (75%), Gaps = 3/599 (1%) Strand=Plus/Plus Query 283035 TGTCTACTAGGTAATGGTATGGTTATCGACCTGGCTTTCCTTCTCGAGGAATGTAAAAAC 283094 || || || ||||| |||||||| || || |||| |||||||| ||||||||||||||| Sbjct 119 TGCCTTCTGGGTAACGGTATGGTGATTGATTTGGCATTCCTTCTTGAGGAATGTAAAAAC 178 Query 283095 ATAGAGTCCCGTTTTGGTGTGTCTTGTCTCCCTCGCCTACGTATCTCAGACAGGGCACAC 283154 || || | | ||||| | |||||||| ||| |||||||| || || | ||||| Sbjct 179 ATCGATTTAAGGTTTGGAATTTCTTGTCTAAATCGTCTACGTATTTCTGATCGAGCACAT 238 Query 283155 ATTGTCTTTCCCTTTCACAAGAAGGTAGACTATCTTCAGGATAGAAAGACAGGAGTTAAG 283214 |||||||| || || || ||||| ||||| ||| | || |||| ||||||||| ||||| Sbjct 239 ATTGTCTTCCCTTTCCATAAGAAAGTAGATTATTTACAAGATAAAAAGACAGGGGTTAAA 298 Query 283215 ACTACTTGTCAAGGCATTGGACCTGCCTACTCTGACAAGGTCTCTCGTCGAGGAATAAGA 283274 ||||| |||||||| || ||||| || ||||| || ||| |||| || | ||||| || Sbjct 299 ACTACCTGTCAAGGTATCGGACCCGCATACTCCGATAAGATCTCCCGAAGGGGAATCAGG 358 Query 283275 ATGGCAACCTTGAGAGACAAGAGTGCATTTACTGTGGCCTATTGGAAGTTGGTAGAGTAT 283334 || | ||| |||| | | ||| ||| | | || |||||||| |||| | ||| Sbjct 359 ATTGGAACTTTGAAAAATAAGGAAAAGTTTTCCCTAGCTTATTGGAAACTGGTTGCATAT 418 Query 283335 CATCGCAACATCTTTCCTGAACTGTCAGGGTTTGACTTTCAGGCCATCCTAGATCTGCAC 283394 ||||| |||||||| |||| || | ||||| ||||| || || || ||| ||||| Sbjct 419 CATCGAAACATCTTCTCTGATCT---TGACTTTGATTTTCAAGCTATACTTGATTTGCAC 475 Query 283395 CTGAACCAGTACCGAGACATCTTTCTCCCCCTTCTAGTAGACTCGTGTTCTCTTCTTCAT 283454 || || ||||| || || || || || | | ||||| || | ||||||| Sbjct 476 CTAAAACAGTATGCGGATATTTTCCTTCCTTTGACCATCGACTCATGCAATTTTCTTCAC 535 Query 283455 CGAGAACTAGATCTAGGTCATGAGATTCTAGTAGAGTGTTCTCAGGCTTGCATGTTGGAC 283514 | |||||| || ||||| || ||||| | ||||| |||||||| ||||| ||||||||| Sbjct 536 CAAGAACTTGACTTAGGTAATAAGATTTTGGTAGAATGTTCTCAAGCTTGTATGTTGGAC 595 Query 283515 ATTGACCATGGCTTTTACCCTTTTGTAACCTCTTCTTCCACCTGTGTAGGAGGAGTGATC 283574 || || ||||||||||| |||||||| ||||||||||| || ||||||||||||| ||| Sbjct 596 ATCGATCATGGCTTTTATCCTTTTGTGACCTCTTCTTCAACTTGTGTAGGAGGAGCAATC 655 Query 283575 TCTGGCTTGGGTCTTCCACCCCAGAAAGTTTCTACCATTGGTGTTGTTAAAGCTATTGT 283633 || || ||||| | ||||| || ||| |||| || || || || | ||||| ||||| Sbjct 656 TCCGGGTTGGGATTGCCACCTCAAAAATTTTCCACTATCGGCGTCGCCAAAGCCATTGT 714 >seq4716 Length=625 Score = 205 bits (226), Expect = 3e-47 Identities = 350/499 (70%), Gaps = 19/499 (4%) Strand=Plus/Minus Query 386891 TCTTCATACTCATCAAAGATGTCATCCGTGCGCACAATCTTAAAATCTTCGGAAGAACAC 386950 |||||||| || || ||||| ||| | || ||||||||||| || ||||| | ||| Sbjct 535 TCTTCATATTCTTCGAAGATTTCAGCAGTTTTGACAATCTTAAAGTCATCGGAGGTACAT 476 Query 386951 TTGTAACCTT---GCTTGAGCAAGAGTATTAATAGCATGTAGTCCGTGTTAAGACATGAC 387007 || || |||| | | ||||| ||||| ||||| || || || ||||||| || Sbjct 475 TTATATCCTTTACGGATAAGCAA---AATTAACAGCATATAATCGGTACTAAGACAAGAT 419 Query 387008 CTTCTGCCGGTTTTTAGTTTCTCATAGACTCTCTGGAAAGCATCATAGTCGGTTAGCAGC 387067 | ||| || |||| |||||||||| || | || || | || || || |||| Sbjct 418 CGTCTCCCAATTTTATGTTTCTCATAAACGCGTTGAAAGGAGTCGTAATCATCGAGCAAT 359 Query 387068 TTATCCTCGATGTCAGACAGATCAGGCAAGTTCCAACCCCAGTAGAGGTGACAGATAAGG 387127 ||| || | | ||| | ||||||||| |||| |||||||| || |||||||| | | Sbjct 358 CCATCTTCAAGATGAGAAATATCAGGCAAAGTCCATCCCCAGTAAAGATGACAGATCAAG 299 Query 387128 TTAATATTCTTGTAGTAATGCGAATAACCTTTCTCATTGAGAGCTTTGAACATGAGTGGT 387187 || || || ||||| |||| ||||||||| | || | || || |||||||| || | Sbjct 298 TTGATGTTTTTGTAATAATTCGAATAACCCCTTTCGCTCAGGGCCTTGAACATAAGATCT 239 Query 387188 TTGCTAGTTCC----TTCCTTCTTACCCTTATCGTTTACAGG--TAGCTCTCTTACTA-G 387240 || || ||||| ||||||| | | | || | | ||| | | ||| | | || | Sbjct 238 TTACTTGTTCCACGTTTCCTTC---CACGT-TCATCCAAAGGAATGGATCTTTGAATATG 183 Query 387241 TTCTCCTCTCTTCATACCATAGGAAGTAAAGAAATCGTCCAGATCGATAAACAAGGTCTT 387300 ||| ||| | ||||| ||||| |||||||| | ||||||| |||| | || ||| | || Sbjct 182 TTCCCCTGTTTTCATCCCATAAGAAGTAAAATACTCGTCCAAATCGTTGAA-AAGATTTT 124 Query 387301 T-GTATTCTTTATCACCTGCTTACCTTGGAAGCGCTCCATGGCCTTGATAAAGTTCTTTC 387359 | ||||| || ||||| || || ||||| | | |||||| || |||||||| || | | Sbjct 123 TGGTATTTTTGATCACTTGTTTTCCTTGATATCTCTCCATTGCTTTGATAAAATTTTCTT 64 Query 387360 TCTCCTCGTAGTTATTACG 387378 | || || ||||| || || Sbjct 63 TATCTTCATAGTTGTTCCG 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884665523121378