Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3219 300 7e-79 >seq3219 Length=3450 Score = 300 bits (332), Expect = 7e-79 Identities = 239/283 (84%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| | ||||||| |||||||| |||||| Sbjct 2592 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATATGTGCGAGTATTTGGGTGGCAAACC 2651 Query 468 CGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCC----GTGAGGGTG-CACCATCGA 521 | | ||||||||||||| || ||||| ||| | ||| ||| || |||||| Sbjct 2652 CATAATGCGTAATGAAAGTAAA---AGGTGTGAAACATTCTNTGAATGTGGCAACATCGA 2708 Query 522 CCGATCCTGATG-TCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| | |||| ||| || | ||||||| ||||||||| ||||||||||||||||| Sbjct 2709 CCGACCATGATCCTCTGGTGAAAGGTTTGAGTTAGAGCATAGATGTTGGGACCCGAAAGA 2768 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||||| |||||||| |||||| |||||||||||||| |||| Sbjct 2769 TGGTGAACTATGCCTGAGTAGGGCGAAGCCAGGGGAAACCCTGGTGGAGGCTCGAAGCGA 2828 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2829 TTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 2871 Score = 215 bits (238), Expect = 2e-53 Identities = 155/179 (87%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84 ||| || | |||| |||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 2118 TGACGCGCTTTCGTCGAGTCGAGTTGCTTGGGAATGCAGCTCTAAATGGGTGGTAAATTC 2177 Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 | ||||||||||||||||||| ||||||||||| | ||||||| |||| |||||||| Sbjct 2178 CATCTAAAGCTAAATATTGGCGTGAGACCGATAGNGAACAAGTACCGTGAGGGAAAGATG 2237 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||||| |||||| |||||||||||||||| || |||||||| | |||||||| || ||| Sbjct 2238 AAAAGAACTTTGAAAAGAGAGTTAAAAAGTACTTGAAATTGCTAAAAGGGAACCGATTG 2296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079866237800