Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2746 551 2e-154 seq83 551 2e-154 seq5 551 2e-154 seq1 551 2e-154 >seq2746 Length=4197 Score = 551 bits (610), Expect = 2e-154 Identities = 433/509 (85%), Gaps = 7/509 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||||| | | |||| | || |||||||||||||||||| Sbjct 45 GTACTCATTCCAATTGCAAGACACTGT-GTGCCCCGCATTGATATTTATTGTCACTACCT 103 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 104 CCCCGAATTGGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATT 163 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 164 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTCACCGCCATGGTA 223 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | ||| || ||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct 224 GTCCAATACACTACCATCGAAAGCTGATAGGGCAGAAACTTGAATGATTCATCGCCGGCA 283 Query 241 C-AAGGCC-ATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 | |||||| |||||| || ||||||||||| ||||||| | | ||||| | |||| Sbjct 284 CAAAGGCCTCTGCGATCCGCACAGTTATTATGACTCACCAAAGGCCTCCGAAAAGGGTTG 343 Query 299 GTTTTTTATCTAATAAATACA-CCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCT 356 | || ||||||||||| || | || | |||| | | ||| | ||||||||||||| Sbjct 344 G-TTGATATCTAATAAACGCATCTCCACCAGAAGAAGAGAATTTAATGCATGTATTAGCT 402 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||| || Sbjct 403 CTAGAATTACTACGGTTATCCAAGTAGTAAGGTATTATCAAATAAACTATAACTGATATA 462 Query 417 ATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||| |||||||||||||||||| | |||| ||||||||| |||||||||||||||| Sbjct 463 ATGAGCCGTTCGCAGTTTCACTGTATAAAATTGTTTATACTTACACATGCATGGCTTAAT 522 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||| ||||||||||||||| Sbjct 523 CTTTGAGACGAGCGTATGACTACTGGCAG 551 >seq83 Length=20893 Score = 551 bits (610), Expect = 2e-154 Identities = 433/509 (85%), Gaps = 7/509 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||||| | | |||| | || |||||||||||||||||| Sbjct 45 GTACTCATTCCAATTGCAAGACACTGT-GTGCCCCGCATTGATATTTATTGTCACTACCT 103 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 104 CCCCGAATTGGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATT 163 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 164 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTCACCGCCATGGTA 223 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | ||| || ||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct 224 GTCCAATACACTACCATCGAAAGCTGATAGGGCAGAAACTTGAATGATTCATCGCCGGCA 283 Query 241 C-AAGGCC-ATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 | |||||| |||||| || ||||||||||| ||||||| | | ||||| | |||| Sbjct 284 CAAAGGCCTCTGCGATCCGCACAGTTATTATGACTCACCAAAGGCCTCCGAAAAGGGTTG 343 Query 299 GTTTTTTATCTAATAAATACA-CCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCT 356 | || ||||||||||| || | || | |||| | | ||| | ||||||||||||| Sbjct 344 G-TTGATATCTAATAAACGCATCTCCACCAGAAGAAGAGAATTTAATGCATGTATTAGCT 402 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||| || Sbjct 403 CTAGAATTACTACGGTTATCCAAGTAGTAAGGTATTATCAAATAAACTATAACTGATATA 462 Query 417 ATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||| |||||||||||||||||| | |||| ||||||||| |||||||||||||||| Sbjct 463 ATGAGCCGTTCGCAGTTTCACTGTATAAAATTGTTTATACTTACACATGCATGGCTTAAT 522 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||| ||||||||||||||| Sbjct 523 CTTTGAGACGAGCGTATGACTACTGGCAG 551 >seq5 Length=33316 Score = 551 bits (610), Expect = 2e-154 Identities = 433/509 (85%), Gaps = 7/509 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||||| | | |||| | || |||||||||||||||||| Sbjct 33272 GTACTCATTCCAATTGCAAGACACTGT-GTGCCCCGCATTGATATTTATTGTCACTACCT 33214 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 33213 CCCCGAATTGGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATT 33154 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 33153 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTCACCGCCATGGTA 33094 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | ||| || ||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct 33093 GTCCAATACACTACCATCGAAAGCTGATAGGGCAGAAACTTGAATGATTCATCGCCGGCA 33034 Query 241 C-AAGGCC-ATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 | |||||| |||||| || ||||||||||| ||||||| | | ||||| | |||| Sbjct 33033 CAAAGGCCTCTGCGATCCGCACAGTTATTATGACTCACCAAAGGCCTCCGAAAAGGGTTG 32974 Query 299 GTTTTTTATCTAATAAATACA-CCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCT 356 | || ||||||||||| || | || | |||| | | ||| | ||||||||||||| Sbjct 32973 G-TTGATATCTAATAAACGCATCTCCACCAGAAGAAGAGAATTTAATGCATGTATTAGCT 32915 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||| || Sbjct 32914 CTAGAATTACTACGGTTATCCAAGTAGTAAGGTATTATCAAATAAACTATAACTGATATA 32855 Query 417 ATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||| |||||||||||||||||| | |||| ||||||||| |||||||||||||||| Sbjct 32854 ATGAGCCGTTCGCAGTTTCACTGTATAAAATTGTTTATACTTACACATGCATGGCTTAAT 32795 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||| ||||||||||||||| Sbjct 32794 CTTTGAGACGAGCGTATGACTACTGGCAG 32766 >seq1 Length=34634 Score = 551 bits (610), Expect = 2e-154 Identities = 433/509 (85%), Gaps = 7/509 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| |||||| | | |||| | || |||||||||||||||||| Sbjct 45 GTACTCATTCCAATTGCAAGACACTGT-GTGCCCCGCATTGATATTTATTGTCACTACCT 103 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 104 CCCCGAATTGGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATT 163 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 164 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTCACCGCCATGGTA 223 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | ||| || ||||||||||||| |||||||||||||| |||||||| |||||||||| Sbjct 224 GTCCAATACACTACCATCGAAAGCTGATAGGGCAGAAACTTGAATGATTCATCGCCGGCA 283 Query 241 C-AAGGCC-ATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 | |||||| |||||| || ||||||||||| ||||||| | | ||||| | |||| Sbjct 284 CAAAGGCCTCTGCGATCCGCACAGTTATTATGACTCACCAAAGGCCTCCGAAAAGGGTTG 343 Query 299 GTTTTTTATCTAATAAATACA-CCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCT 356 | || ||||||||||| || | || | |||| | | ||| | ||||||||||||| Sbjct 344 G-TTGATATCTAATAAACGCATCTCCACCAGAAGAAGAGAATTTAATGCATGTATTAGCT 402 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||| || Sbjct 403 CTAGAATTACTACGGTTATCCAAGTAGTAAGGTATTATCAAATAAACTATAACTGATATA 462 Query 417 ATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||| |||||||||||||||||| | |||| ||||||||| |||||||||||||||| Sbjct 463 ATGAGCCGTTCGCAGTTTCACTGTATAAAATTGTTTATACTTACACATGCATGGCTTAAT 522 Query 476 CTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||| ||||||||||||||| Sbjct 523 CTTTGAGACGAGCGTATGACTACTGGCAG 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510305811456