Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq458 102 6e-17 >seq458 Length=35501 Score = 102 bits (112), Expect = 6e-17 Identities = 426/662 (64%), Gaps = 14/662 (2%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||||||| ||| | ||| || || || |||||||| || || || || | ||| Sbjct 31243 ACAAACTTGGAAAGATTGATAGACGCAAGATTACAGACAGCAATTTCATCTGGTGAAGTA 31184 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGAT 66110 || || | ||| || || || ||||| || | | || || || | ||| | ||| | Sbjct 31183 TATTCCATAATCTCAGTACAAAGATT--TGACGATTTGATAGTTCCAAGATTTTTTTGGT 31126 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 || |||| ||| || ||||| ||| | ||| || ||||| ||||| || | || | Sbjct 31125 TAGATTTGCTATTACAAGCATCTTTGAAACACATATAGGGAGTTCCGGTTTCGATCTGAG 31066 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACC-GCCCTACCTTTG 66229 |||| | || |||||| | || |||| ||| |||| || | ||| | Sbjct 31065 ACTCCAATATTTGAAACCAAAGTTTTTGAGCTTTCATCGTT-GTACGAGCTTTGCCTGAG 31007 Query 66230 CGTTCGTAATGTTCGTAGAG-GTGTTCGAAGGATTCACCCCAT--ACT-TCGGACAGACA 66285 |||||| | | ||| | | | | || |||| || | || || | |||| Sbjct 31006 TTTTCGTATT--TAGTATAAAGAGCTACAA--ATTCTTCCGAATGACAATCAGCGAGACC 30951 Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| || | | ||| || | || |||||| || || || || || ||| || Sbjct 30950 TGGGCATTCATTTGGGCAGAAGAGACTCCAATCTTGATTCTTTTGAACGCGTTCCATGAA 30891 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTG 66405 || |||||| | ||| || | || |||||||| | ||| || || || | || || Sbjct 30890 TAAATCAGGAACCCAAAGTCCATAAAAGAGATCTCTTGCACGCGCTTCTTCTTTACCATG 30831 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 ||| || || | ||||| |||| || || |||||| ||||| || || | || Sbjct 30830 ATTCTTTTTCAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGTTCGAGATAAACAGC 30771 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 ||| || || | ||||| || || ||||| || ||||| ||||| || || || || Sbjct 30770 GAAAGATCCTTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCAGTATCATTAAAAAC 30711 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCG 66585 | |||||| ||||| || || || || |||||||| || || ||| Sbjct 30710 TCTCAACATTGGTACAAGACCATTTGAAGAACCATTGGTTCCACGAATATAGGAGTTAGA 30651 Query 66586 TGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA 66645 | | || |||| ||||| | |||||||||||| || |||||||||| ||||| Sbjct 30650 TCCACGAATATTGTGAATTGAAATACCAATACCACCAGCATACTTCGAGATGCATGCACA 30591 Query 66646 AT 66647 || Sbjct 30590 AT 30589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397537784335040