Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6149 192 5e-44 >seq6149 Length=3715 Score = 192 bits (212), Expect = 5e-44 Identities = 713/1100 (65%), Gaps = 33/1100 (3%) Strand=Plus/Plus Query 65462 TAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGAT 65521 || |||||||| ||| || || ||| | || | ||||| | |||||| | || ||| Sbjct 415 TACATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTATTGCCCATAATTTGCGAGGTTGAT 474 Query 65522 GCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGA 65581 || |||||||| || || |||||||| ||||| || | ||||| || |||||| | Sbjct 475 GCGGTTGGCATTGGTGCAACCAACAAAGAGTTGCGTACTCCGTGTTGTTTGATGTTGGCA 534 Query 65582 CGCAATTCGTCCCAGTTCCACATCGGTTT-ATCGTCGACATCCACGGGCCACATATCCTG 65640 || | ||| |||| | ||| ||||| | || | ||| ||||||||| | Sbjct 535 CGTAGTTCAGCCCAATCCCA--TCGGTCAGAAGGTGTA-----ACGCCCCACATATCTGG 587 Query 65641 TTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTT 65700 ||||| | | || ||||| | || || | | | | |||| ||| | || Sbjct 588 TTGCAAGATGCCTTTACTGACTGGACTGCCCTCGTACGTCTTGTACGGTCCGAACCTTTT 647 Query 65701 GGCAAGTTGACAGCT---GGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATG-CGTC 65756 || || ||| |||| | ||||| || ||||||||||||||||| | | Sbjct 648 CGCTTCTTCGCAGGAAGCGGTC---AAAGCGGCGAAGTAAATGGTCTCGAAAATATCTTT 704 Query 65757 GATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGG 65816 | ||| | || | || | || || ||| ||||||| | ||||| || || | ||| | Sbjct 705 GTTTAGCTGCAAG-GCTGCTTCACTTTCGAACGGCATGCGCATCATGATGAATGCGTCAG 763 Query 65817 CCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT-CTC-GCCTC 65874 | | |||||| || || | ||| || ||||| || | ||| ||||| || ||| || || Sbjct 764 CTAAACCTTGTACGCCCAAACCAATTGGACGGTGTCTCAAGTTGGA--GTACTCAGCTTC 821 Query 65875 AGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCAC 65934 ||| |||||||| |||| ||| || | || ||||| ||| || || | || Sbjct 822 TTTTACTGGGTAGTAGTTGACATCAATTACACGGTTCAAGTTGATCGTAACTTGCTTGAC 881 Query 65935 GATACGTCGCAATTG--TTCGAAATC--AAAATGTTTAGGACGATCGGGAGTGCCGGACA 65990 |||| ||| || || ||| | ||| || || | | ||| ||| Sbjct 882 GATA--TCGAAAAGCATTTGGAAGTTGTAAACTGGTTTGTCC--TCGT---TGCTTTGGT 934 Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 | || | || ||||| || | || | ||| || || || || || ||||| |||| Sbjct 935 CGACCATTTTTGGAAGACAAATACTAGCCAAGTTACAAACTGCGATTTCATCAGGTGCGG 994 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||||| ||||| ||||||| ||| || | ||||||||||| || ||||| | Sbjct 995 TGTACTCGATGATTTCAGTGCACAAATTGCTACTTTTAATGGTGCCCAAGTTTTGTTGGT 1054 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | || || ||||| || || ||||| | |||||| || || || || |||||||| Sbjct 1055 TGGATTTACGGTTGCACGCGTCTTTGTAAAGCATGTATGGGGTTCCAGTTTCAACTTGAC 1114 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 || || || | ||| | | | || || || | | || | || | || Sbjct 1115 TTTCGATTATTTTGAACCACAACTCTTGCGCACGAACGGTCCTGAAGCCCTTGCCCTCGC 1174 Query 66231 GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGAC 66290 ||||| | |||||| | |||||| || ||||| ||| || || | | Sbjct 1175 TCTCGTACTTTTCGTACAAAGTTTCGAACTCCTCGCCCCACGTATCGTGCAAACCACG-C 1233 Query 66291 ACTT-GTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 || || || || | || | ||| | ||| || |||||| ||| || | Sbjct 1234 GCTACGTTCGGGCAAAATAGGGTCCATTGCTTATCTGCTTGTACACGCTTCATGAACAAG 1293 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || |||||||| | ||||||||| | || || || || | || || || ||| Sbjct 1294 TCGGGTATCCACATGGCGTAGAACAAGTCACGCGCGCGGGCATTTTCGTCCCCATGGTTT 1353 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || ||| || | ||| || |||| ||| | |||||||||||||| ||| |||||||| Sbjct 1354 TTCTTCAAATCCAAGAATTCGAAGACGTCCGAATGCCATGGTTCCAAGTAAATGGCGAAA 1413 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 || || | ||||||||||| |||||||| |||||||| ||| | |||||||| | Sbjct 1414 GACCCTTTGCGTTTGCCGCCCCCTTGGTCTACGTAGCGTGCGGTGTCATTGAAGACTCTT 1473 Query 66530 AACATCGGTACGAGCCCGTT 66549 | ||| ||||||| ||||| Sbjct 1474 AGCATAGGTACGATGCCGTT 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397524290007440