Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq50892 109 1e-21 seq43102 109 1e-21 >seq50892 Length=141790 Score = 109 bits (120), Expect = 1e-21 Identities = 227/330 (69%), Gaps = 15/330 (5%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC-CGAGTGATTC 69 ||||| |||||| ||| | |||| || | ||||||| || |||| ||| | | | Sbjct 74622 AGGGGAGTGAAA-AGAACATGAAACCATAAACTTACAAGCAGTAGGAGGACGACTAAAAC 74680 Query 70 GG-TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 | |||| |||||||| ||| | |||||||| ||| ||| || | || ||||||| Sbjct 74681 GTCTGACTGCGTGCCTGTTGAAGAATGAGCCGGCGACTTATAGGT-AGTGGC-AGGTTAA 74738 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 || | ||| |||| ||||||||||||||| || |||||| || || | Sbjct 74739 GGTAGAGAATACCGA-AGCCACAGTGAAAGCGAGCCTGAATAGGGCG-----TTTGTCAC 74792 Query 189 GCT----AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCG 244 | |||| |||| || ||||||| ||| || |||||||||| ||||| | Sbjct 74793 TATTTATAGACCCGAACCCGGATGATCTAACCATGATCAGGTTGAAGCTTAGGTAATACT 74852 Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304 ||||||||| ||||| | |||||||| | ||||||| | | || |||||||| Sbjct 74853 AAGTGGAGGACCCAACCGACTGATGTTGAAAAATCACCGGATGAATTGTGGTTAGGGGTG 74912 Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||| ||||||| || | ||| ||||| || Sbjct 74913 AAATGCCAATCGAATTCGGAGCTAGCTGGT 74942 Score = 109 bits (120), Expect = 1e-21 Identities = 227/330 (69%), Gaps = 15/330 (5%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC-CGAGTGATTC 69 ||||| |||||| ||| | |||| || | ||||||| || |||| ||| | | | Sbjct 137467 AGGGGAGTGAAA-AGAACATGAAACCATAAACTTACAAGCAGTAGGAGGACGACTAAAAC 137409 Query 70 GG-TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 | |||| |||||||| ||| | |||||||| ||| ||| || | || ||||||| Sbjct 137408 GTCTGACTGCGTGCCTGTTGAAGAATGAGCCGGCGACTTATAGGT-AGTGGC-AGGTTAA 137351 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 || | ||| |||| ||||||||||||||| || |||||| || || | Sbjct 137350 GGTAGAGAATACCGA-AGCCACAGTGAAAGCGAGCCTGAATAGGGCG-----TTTGTCAC 137297 Query 189 GCT----AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCG 244 | |||| |||| || ||||||| ||| || |||||||||| ||||| | Sbjct 137296 TATTTATAGACCCGAACCCGGATGATCTAACCATGATCAGGTTGAAGCTTAGGTAATACT 137237 Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304 ||||||||| ||||| | |||||||| | ||||||| | | || |||||||| Sbjct 137236 AAGTGGAGGACCCAACCGACTGATGTTGAAAAATCACCGGATGAATTGTGGTTAGGGGTG 137177 Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||| ||||||| || | ||| ||||| || Sbjct 137176 AAATGCCAATCGAATTCGGAGCTAGCTGGT 137147 >seq43102 Length=56976 Score = 109 bits (120), Expect = 1e-21 Identities = 227/330 (69%), Gaps = 15/330 (5%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC-CGAGTGATTC 69 ||||| |||||| ||| | |||| || | ||||||| || |||| ||| | | | Sbjct 15333 AGGGGAGTGAAA-AGAACATGAAACCATAAACTTACAAGCAGTAGGAGGACGACTAAAAC 15391 Query 70 GG-TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 | |||| |||||||| ||| | |||||||| ||| ||| || | || ||||||| Sbjct 15392 GTCTGACTGCGTGCCTGTTGAAGAATGAGCCGGCGACTTATAGGT-AGTGGC-AGGTTAA 15449 Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 || | ||| |||| ||||||||||||||| || |||||| || || | Sbjct 15450 GGTAGAGAATACCGA-AGCCACAGTGAAAGCGAGCCTGAATAGGGCG-----TTTGTCAC 15503 Query 189 GCT----AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCG 244 | |||| |||| || ||||||| ||| || |||||||||| ||||| | Sbjct 15504 TATTTATAGACCCGAACCCGGATGATCTAACCATGATCAGGTTGAAGCTTAGGTAATACT 15563 Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304 ||||||||| ||||| | |||||||| | ||||||| | | || |||||||| Sbjct 15564 AAGTGGAGGACCCAACCGACTGATGTTGAAAAATCACCGGATGAATTGTGGTTAGGGGTG 15623 Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||| ||||||| || | ||| ||||| || Sbjct 15624 AAATGCCAATCGAATTCGGAGCTAGCTGGT 15653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972304922624