Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq50892 71.6 1e-10 seq43102 71.6 1e-10 >seq50892 Length=141790 Score = 71.6 bits (78), Expect = 1e-10 Identities = 92/124 (74%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||||||||||||| ||||||||||| ||||| ||| | | | || || |||||| Sbjct 73810 TACGGTTACCTTGTTACGACTTCACCCTAGTCACTAAT-TCTACCT--TAGGCACCCTCC 73754 Query 78 C---GAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 | | ||||| || ||||| | |||| || |||||||||||||||||||| Sbjct 73753 CCCAAACGGTTAGAGTAATGACTTCGGGTATAACCAGCTTCCATGGTGTGACGGGCGGTG 73694 Query 135 TGTA 138 |||| Sbjct 73693 TGTA 73690 Score = 71.6 bits (78), Expect = 1e-10 Identities = 92/124 (74%), Gaps = 6/124 (5%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||||||||||||| ||||||||||| ||||| ||| | | | || || |||||| Sbjct 138279 TACGGTTACCTTGTTACGACTTCACCCTAGTCACTAAT-TCTACCT--TAGGCACCCTCC 138335 Query 78 C---GAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 | | ||||| || ||||| | |||| || |||||||||||||||||||| Sbjct 138336 CCCAAACGGTTAGAGTAATGACTTCGGGTATAACCAGCTTCCATGGTGTGACGGGCGGTG 138395 Query 135 TGTA 138 |||| Sbjct 138396 TGTA 138399 >seq43102 Length=56976 Score = 71.6 bits (78), Expect = 1e-10 Identities = 92/124 (74%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||||||||||||| ||||||||||| ||||| ||| | | | || || |||||| Sbjct 14521 TACGGTTACCTTGTTACGACTTCACCCTAGTCACTAAT-TCTACCT--TAGGCACCCTCC 14465 Query 78 C---GAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 | | ||||| || ||||| | |||| || |||||||||||||||||||| Sbjct 14464 CCCAAACGGTTAGAGTAATGACTTCGGGTATAACCAGCTTCCATGGTGTGACGGGCGGTG 14405 Query 135 TGTA 138 |||| Sbjct 14404 TGTA 14401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345435109920