Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq25219 257 3e-66 seq48728 86.0 1e-14 seq32339 75.2 2e-11 >seq25219 Length=11430 Score = 257 bits (284), Expect = 3e-66 Identities = 208/247 (84%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC--TCGAATACATTAGCATG 131 |||||| |||||||||||||||||| ||||||||| | ||| | ||||| ||||||||| Sbjct 5493 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCCGTTGAATATATTAGCATG 5552 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 |||||||| ||||||| | ||| ||||||||||||||| || | ||||||||| Sbjct 5553 GAATAATAAGATAGGACTT-CGGAACTATTTTGTTGGTTTGCGTTAC-GAAGTAATGATT 5610 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||||| ||| |||||| | ||||| |||||||||||||||||||||||||| Sbjct 5611 AATAGGGACAGTTGGGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTCCG 5670 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct 5671 AAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAG 5729 Query 312 TTAGGGG 318 ||||||| Sbjct 5730 TTAGGGG 5736 >seq48728 Length=5170 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 232 GTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 ||||||||||||||||| ||||| ||||||||||||| |||| |||||||||||| Sbjct 4263 GTGAAATTCTTGGATTTCCGAAAGACGAACTACTGCGAAATTATTCATCAAGGATGTTTT 4322 Query 292 CATTAATCAGTGAACGAAAGTTAG 315 |||| |||| ||| ||||| ||| Sbjct 4323 CATTTATCA-AGAATGAAAGCTAG 4345 >seq32339 Length=650 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/53 (92%), Gaps = 1/53 (2%) Strand=Plus/Plus Query 266 GCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||| || ||||||||||||||||||||||| |||||||||||||||| Sbjct 157 GCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914734236416