Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thalassiosira_20oceanica_20[genbank_20GCA_5F000296195.2_202012-07- 25] 50,892 sequences; 92,185,637 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq25219 370 4e-100 >seq25219 Length=11430 Score = 370 bits (410), Expect = 4e-100 Identities = 494/670 (74%), Gaps = 40/670 (6%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| ||||||||||||| |||||| |||||||| || |||| |||||||| | ||||||| Sbjct 7844 TTCAACGAGTCGAGTTGCTTGGGATTGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAAG 7903 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| || |||||||||||||||||| |||| |||||||| |||| ||| Sbjct 7904 CTAAATATTGGTGGGATACCGATAGCGCACAAGTACCGTGAGGGAAAGATGCAAAGAACT 7963 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||| ||||||||||||| || || |||||||||||||||||||||| | |||||| Sbjct 7964 TTGAAAAGAGAGTTAAAGAGTACCTGAAATTGTTGAAAGGGAAGCGAAGGAAACCAG--- 8020 Query 214 TGCC--CGCAGT----TGCTCAACCGGCCCCT--CGGCCGGTGCACTCTTCTGCGGTCA- 264 |||| ||| | | || || || || ||| || ||||| | || || Sbjct 8021 TGCCAACGCTTTGCCATACTTCTCCTGCTGCTTGCGGTAGGGGCACTGTGGCAAGG-CAT 8079 Query 265 -GGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCC--CCCTTCGGG 321 || ||||| | |||| | | | ||| | || || | | ||||||||| Sbjct 8080 GGGTCAGCACCGGCTCTTTCTGGGGCATAT----CTTTGGTTGGTAGGCGACCCTTCGGG 8135 Query 322 GGGTGTTATAGCCCGGGGTGGAATGCGGCCC--GCCTGGACTGAGGTCCG-CGCTCCG-G 377 | | || |||| | | ||| || | | ||| |||||||| | |||| | | Sbjct 8136 GTGAGT----GCCC----TCCATTGCTGCTCTGGTTTGGGCTGAGGTCAGTCGCTATGCG 8187 Query 378 CTAG-GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCT 436 || | | ||||||| ||||||| | ||||||||| ||||||||||||||||||| Sbjct 8188 CTCGTGGTGCTGGCAAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTCT 8247 Query 437 AACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTG 496 ||||| | ||||| ||| |||| ||||| | || || |||||| ||| | ||| Sbjct 8248 AACATATGTGCGAATGTGAAGGTGGTAAACCTTTACGTTTATTGAAAGA-AACAGTGGTT 8306 Query 497 GGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGA---TTTGAGTA 553 |||| | | || ||||| ||| ||| | || |||||| | | | ||||| Sbjct 8307 GGAAGC--TTCGGCTGCACAATCCGCCGGCCAACATC-CTTCGGGAGAAAGGTCTGAGTG 8363 Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 8364 TGAGCATACATGTTGGGACCCGAAAGATGGTGAACTATGCCTGATTAGGGCGAAGCCAGG 8423 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||||||| || | ||||| |||||||||||||| ||||| |||||| Sbjct 8424 GGAAACTCTGGTGGAGGCTCGTAGTGATTCTGACGTGCAAATCGATCATCAAAATTGGGT 8483 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 8484 ATAGGGGCGA 8493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078908366600